Motif IL_35199.1 Version IL_35199.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8C3A_481 | 8C3A | 0.1955 | 0 | Tandem non-canonical cWW pairs (H) | 1 | LSU rRNA | A | 1002 | U | 1003 | U | 1004 | A | 1005 | * | U | 1037 | U | 1038 | C | 1039 | U | 1040 | cWW | ncSW | cWw | cWW |
2 | IL_5TBW_041 | 5TBW | 0.1839 | 0 | Tandem non-canonical cWW pairs | 1 | LSU rRNA | A | 1006 | U | 1007 | U | 1008 | A | 1009 | * | U | 1041 | U | 1042 | C | 1043 | U | 1044 | cWW | cWw | cWW | |
3 | IL_8UIW_002 | 8UIW | 0.0000 | 0 | N | yjdF RNA (R. gauvreauii) | C | 100 | U | 101 | U | 102 | C | 103 | * | G | 112 | U | 113 | C | 114 | G | 115 | cWW | cWw | cWW | ||
4 | IL_4V88_473 | 4V88 | 0.1222 | 0 | Tandem non-canonical cWW pairs | A6 | SSU rRNA | U | 1723 | U | 1724 | U | 1725 | G | 1726 | * | C | 1675 | U | 1676 | C | 1677 | A | 1678 | cWW | cWw | cWW | |
5 | IL_5C5W_001 | 5C5W | 0.2655 | 0 | Tandem non-canonical cWW pairs | A | RNA (19-mer) | C | 2 | C | 3 | U | 4 | G | 5 | * | C | 15||||5_556 | U | 16||||5_556 | A | 17||||5_556 | G | 18||||5_556 | cWW | cWW | cWw | cWW |
6 | IL_5C5W_003 | 5C5W | 0.2655 | 0 | Tandem non-canonical cWW pairs | A | RNA (19-mer) | C | 2||||5_556 | C | 3||||5_556 | U | 4||||5_556 | G | 5||||5_556 | * | C | 15 | U | 16 | A | 17 | G | 18 | cWW | cWW | cWw | cWW |
7 | IL_402D_001 | 402D | 0.3148 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (8-mer) | C | 111 | C | 112 | A | 113 | G | 114 | * | C | 103 | C | 104 | A | 105 | G | 106 | cWW | cWW | cWW | cWW |
8 | IL_5J7L_362 | 5J7L | 0.5000 | 2 | AA | SSU rRNA | A | 1204 | U | 1205 | G | 1206 | 2MG | 1207 | * | C | 1051 | G | 1052 | A | 1055 | U | 1056 | cWW | ncSW | cWw | cWW | |
9 | IL_8DK7_002 | 8DK7 | 0.5537 | 3 | C | RNA (34-MER) | C | 21 | C | 22 | G | 26 | G | 27 | * | C | 8 | C | 9 | A | 10 | G | 11 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AUUA*UUCU | 2 |
CCUG*CUAG | 2 |
CUUC*GUCG | 1 |
UUUG*CUCA | 1 |
CCAG*CCAG | 1 |
AUG(2MG)*CGGCAU | 1 |
CCCUUGG*CCAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UU*UC | 4 |
CU*UA | 2 |
CA*CA | 1 |
UG*GGCA | 1 |
CCUUG*CA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (5)
- (3)
- Tandem non-canonical cWW pairs (H) (1)
- Basepair signature
- cWW-L-R-cWW-cWW
- Heat map statistics
- Min 0.00 | Avg 0.33 | Max 0.63
Coloring options: