RNA 3D Hub //

Motif IL_35199.1 Version IL_35199.1 of this group appears in releases 3.88 to 3.88

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_8C3A_4818C3A0.19550Tandem non-canonical cWW pairs (H)1 LSU rRNAA1002U1003U1004A1005*U1037U1038C1039U1040cWWncSWcWwcWW
2 IL_5TBW_0415TBW0.18390Tandem non-canonical cWW pairs1 LSU rRNAA1006U1007U1008A1009*U1041U1042C1043U1044cWWcWwcWW
3 IL_8UIW_0028UIW0.00000Nazaaromatic riboswitch aptamer (yjdF RNA)C100U101U102C103*G112U113C114G115cWWcWwcWW
4 IL_4V88_4734V880.12220Tandem non-canonical cWW pairsA6 SSU rRNAU1723U1724U1725G1726*C1675U1676C1677A1678cWWcWwcWW
5 IL_5C5W_0015C5W0.26550Tandem non-canonical cWW pairsARNA (19-mer)C2C3U4G5*C15||||5_556U16||||5_556A17||||5_556G18||||5_556cWWcWWcWwcWW
6 IL_5C5W_0035C5W0.26550Tandem non-canonical cWW pairsARNA (19-mer)C2||||5_556C3||||5_556U4||||5_556G5||||5_556*C15U16A17G18cWWcWWcWwcWW
7 IL_402D_001402D0.31480Tandem non-canonical cWW pairsB+ARNA (8-mer)C111C112A113G114*C103C104A105G106cWWcWWcWWcWW
8 IL_5J7L_3625J7L0.50002AA SSU rRNAA1204U1205G12062MG1207*C1051G1052A1055U1056cWWncSWcWwcWW
9 IL_8DK7_0028DK70.55373CRNA (34-MER)C21C22G26G27*C8C9A10G11cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUUA*UUCU2
CCUG*CUAG2
CUUC*GUCG1
UUUG*CUCA1
CCAG*CCAG1
AUG(2MG)*CGGCAU1
CCCUUGG*CCAG1
Non-Watson-Crick part of the motif
SequenceCounts
UU*UC4
CU*UA2
CA*CA1
UG*GGCA1
CCUUG*CA1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (5)
  • (3)
  • Tandem non-canonical cWW pairs (H) (1)
    • Basepair signature
    cWW-L-R-cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.33 | Max 0.63
    Help

    Coloring options:

    IL_8C3A_481:IL_8C3A_481 = 0IL_8C3A_481:IL_5TBW_041 = 0.0984IL_8C3A_481:IL_8UIW_002 = 0.1955IL_8C3A_481:IL_4V88_473 = 0.213IL_8C3A_481:IL_5C5W_001 = 0.2992IL_8C3A_481:IL_5C5W_003 = 0.2992IL_8C3A_481:IL_402D_001 = 0.319IL_8C3A_481:IL_5J7L_362 = 0.58IL_8C3A_481:IL_8DK7_002 = 0.6176IL_5TBW_041:IL_8C3A_481 = 0.0984IL_5TBW_041:IL_5TBW_041 = 0IL_5TBW_041:IL_8UIW_002 = 0.1839IL_5TBW_041:IL_4V88_473 = 0.1835IL_5TBW_041:IL_5C5W_001 = 0.2637IL_5TBW_041:IL_5C5W_003 = 0.2637IL_5TBW_041:IL_402D_001 = 0.2853IL_5TBW_041:IL_5J7L_362 = 0.572IL_5TBW_041:IL_8DK7_002 = 0.6261IL_8UIW_002:IL_8C3A_481 = 0.1955IL_8UIW_002:IL_5TBW_041 = 0.1839IL_8UIW_002:IL_8UIW_002 = 0IL_8UIW_002:IL_4V88_473 = 0.1222IL_8UIW_002:IL_5C5W_001 = 0.2655IL_8UIW_002:IL_5C5W_003 = 0.2655IL_8UIW_002:IL_402D_001 = 0.3148IL_8UIW_002:IL_5J7L_362 = 0.5IL_8UIW_002:IL_8DK7_002 = 0.5537IL_4V88_473:IL_8C3A_481 = 0.213IL_4V88_473:IL_5TBW_041 = 0.1835IL_4V88_473:IL_8UIW_002 = 0.1222IL_4V88_473:IL_4V88_473 = 0IL_4V88_473:IL_5C5W_001 = 0.263IL_4V88_473:IL_5C5W_003 = 0.263IL_4V88_473:IL_402D_001 = 0.3296IL_4V88_473:IL_5J7L_362 = 0.4958IL_4V88_473:IL_8DK7_002 = 0.5768IL_5C5W_001:IL_8C3A_481 = 0.2992IL_5C5W_001:IL_5TBW_041 = 0.2637IL_5C5W_001:IL_8UIW_002 = 0.2655IL_5C5W_001:IL_4V88_473 = 0.263IL_5C5W_001:IL_5C5W_001 = 0IL_5C5W_001:IL_5C5W_003 = 0.0002IL_5C5W_001:IL_402D_001 = 0.2332IL_5C5W_001:IL_5J7L_362 = 0.4817IL_5C5W_001:IL_8DK7_002 = 0.5989IL_5C5W_003:IL_8C3A_481 = 0.2992IL_5C5W_003:IL_5TBW_041 = 0.2637IL_5C5W_003:IL_8UIW_002 = 0.2655IL_5C5W_003:IL_4V88_473 = 0.263IL_5C5W_003:IL_5C5W_001 = 0.0002IL_5C5W_003:IL_5C5W_003 = 0IL_5C5W_003:IL_402D_001 = 0.2332IL_5C5W_003:IL_5J7L_362 = 0.4817IL_5C5W_003:IL_8DK7_002 = 0.5989IL_402D_001:IL_8C3A_481 = 0.319IL_402D_001:IL_5TBW_041 = 0.2853IL_402D_001:IL_8UIW_002 = 0.3148IL_402D_001:IL_4V88_473 = 0.3296IL_402D_001:IL_5C5W_001 = 0.2332IL_402D_001:IL_5C5W_003 = 0.2332IL_402D_001:IL_402D_001 = 0IL_402D_001:IL_5J7L_362 = 0.5061IL_402D_001:IL_8DK7_002 = 0.5884IL_5J7L_362:IL_8C3A_481 = 0.58IL_5J7L_362:IL_5TBW_041 = 0.572IL_5J7L_362:IL_8UIW_002 = 0.5IL_5J7L_362:IL_4V88_473 = 0.4958IL_5J7L_362:IL_5C5W_001 = 0.4817IL_5J7L_362:IL_5C5W_003 = 0.4817IL_5J7L_362:IL_402D_001 = 0.5061IL_5J7L_362:IL_5J7L_362 = 0IL_5J7L_362:IL_8DK7_002 = 0.5669IL_8DK7_002:IL_8C3A_481 = 0.6176IL_8DK7_002:IL_5TBW_041 = 0.6261IL_8DK7_002:IL_8UIW_002 = 0.5537IL_8DK7_002:IL_4V88_473 = 0.5768IL_8DK7_002:IL_5C5W_001 = 0.5989IL_8DK7_002:IL_5C5W_003 = 0.5989IL_8DK7_002:IL_402D_001 = 0.5884IL_8DK7_002:IL_5J7L_362 = 0.5669IL_8DK7_002:IL_8DK7_002 = 0IL_8C3A_481IL_5TBW_041IL_8UIW_002IL_4V88_473IL_5C5W_001IL_5C5W_003IL_402D_001IL_5J7L_362IL_8DK7_002Discrepancy0.000.100.200.300.400.500.60
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