Motif IL_37996.1 Version IL_37996.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1GID_003 | 1GID | 0.0000 | 0 | A | P4-P6 RNA RIBOZYME DOMAIN | G | 112 | A | 113 | A | 114 | A | 115 | G | 116 | * | U | 205 | A | 206 | A | 207 | C | 208 | cWW | tSH | tHS | ncWW | |
| 2 | IL_3O58_130 | 3O58 | 0.2029 | 1 | 1 | 25S ribosomal RNA | C | 2849 | G | 2850 | A | 2851 | C | 2852 | A | 2853 | * | U | 2835 | A | 2837 | A | 2838 | G | 2839 | cWW | tSH | ntHS | cWW | |
| 3 | IL_3FTM_001 | 3FTM | 0.2171 | 0 | B+A | RNA (12-mer) | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | * | U | 46 | G | 47 | A | 48 | G | 49 | cWW | ntSH | cWW | ||
| 4 | IL_1X8W_002 | 1X8W | 0.3257 | 0 | A | Tetrahymena ribozyme RNA | G | 112 | A | 113 | A | 114 | A | 115 | G | 116 | * | U | 205 | A | 206 | A | 207 | C | 208 | cWW | tSH | ncWW | ||
| 5 | IL_3FTM_002 | 3FTM | 0.4632 | 0 | UAA/GAN related | D+C | RNA (12-mer) | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | * | U | 46 | G | 47 | A | 48 | G | 49 | cWW | ntSH | cWW | |
| 6 | IL_1GID_010 | 1GID | 0.4653 | 0 | B | P4-P6 RNA RIBOZYME DOMAIN | G | 112 | A | 113 | A | 114 | A | 115 | G | 116 | * | U | 205 | A | 206 | A | 207 | C | 208 | cWW | tSH | tHS | cWW | |
| 7 | IL_3G78_010 | 3G78 | 0.5943 | 0 | A | Group II catalytic intron D1-D4-3 | C | 190 | A | 191 | A | 192 | A | 193 | G | 194 | * | U | 172 | G | 173 | A | 174 | G | 175 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAG*UAAC | 3 |
| CGGAA*UGAG | 2 |
| CGACA*UCAAG | 1 |
| CAAAG*UGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*AA | 3 |
| GGA*GA | 2 |
| GAC*CAA | 1 |
| AAA*GA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_37996.1 | Only in the parent motif |
|---|---|---|---|
| IL_10358.1 Compare | IL_3G78_010, IL_1GID_010, IL_1GID_003 | IL_3O58_130, IL_1X8W_002, IL_3FTM_002, IL_3FTM_001 | IL_3LOA_001, IL_3BNT_005, IL_3BNT_002 |
| IL_90126.1 Compare | IL_3FTM_002, IL_3FTM_001 | IL_3G78_010, IL_3O58_130, IL_1X8W_002, IL_1GID_003, IL_1GID_010 | IL_2ZY6_001, IL_1FJG_061, IL_3F1H_057, IL_3FS0_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_37996.1 | Only in the child motif |
|---|---|---|---|
| IL_31555.1 Compare | IL_1GID_010, IL_1X8W_002, IL_3G78_010, IL_3FTM_002, IL_3FTM_001, IL_1GID_003 | IL_3O58_130 | IL_3LOA_001, IL_2XZM_041, IL_4A1B_026, IL_2XZM_039, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_3BNQ_002, IL_4A1B_120, IL_3BNQ_008 |
- Annotations
-
- (6)
- UAA/GAN related (1)
- Basepair signature
- Heat map statistics
- Min 0.08 | Avg 0.33 | Max 0.59
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