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Motif IL_31555.1 Version IL_31555.1 of this group appears in releases 0.6 to 0.6

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4break 5 6 7 8 91-92-72-83-64-5
1 IL_3BNQ_0023BNQ0.12270A+BA site of human mitochondrial ribosome, A chainC7A8C9C10*G15C16A17A18G19cWWcwWncBWcWW
2 IL_3BNQ_0083BNQ0.00000C+DA site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chainC7A8C9C10*G13C14A15A16G17cWWcwWncwWcWW
3 IL_3BNT_0023BNT0.12750Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeC6A7C8C9*G14||||4_665C15||||4_665A16||||4_665A17||||4_665G18||||4_665cWWcwWncBWcWW
4 IL_3BNT_0053BNT0.12750Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeC6||||4_665A7||||4_665C8||||4_665C9||||4_665*G14C15A16A17G18cWWcwWncBWcWW
5 IL_3LOA_0013LOA0.39280UAA/GAN relatedA+BRNA (21-mer) + RNA (23-mer)G1401C1402C1403C1404*G1497U1498A1499A1500C1501cWWncWWcWW
6 IL_2XZM_0412XZM0.51551A SSU rRNAU728U729A730C731*G784G785A787U788A789cWWncwWncWWcWW
7 IL_3FTM_0023FTM0.83420UAA/GAN relatedC+DRNA (11-mer) + RNA (12-mer)U46G47A48G49*C-1G1G2A3A4cWWntHScWW
8 IL_3G78_0103G780.88300AGroup II catalytic intron D1-D4-3U172G173A174G175*C190A191A192A193G194cWWtSHtHScWW
9 IL_2XZM_0392XZM0.77340A SSU rRNAA710C711U712U713*A688A689A690A691U692cWWncWWncWWcWW
10 IL_4A1B_1204A1B0.801421 LSU rRNAU3043A3044A3046A3048*U3073G3074A3075A3076G3077cWWtHScWW
11 IL_4A1B_0224A1B0.779001 LSU rRNAU499G500A501G502*C475A476G477A478G479cWWtSHntHScWW
12 IL_3FTM_0013FTM0.82010A+BRNA (11-mer) + RNA (12-mer)U46G47A48G49*C-1G1G2A3A4cWWntHScWW
13 IL_1X8W_0021X8W0.80300AGroup I catalytic intronU205A206A207C208*G112A113A114A115G116ncWWtHScWW
14 IL_1GID_0101GID0.84770BP4-P6 RNA RIBOZYME DOMAINU205A206A207C208*G112A113A114A115G116cWWtSHtHScWW
15 IL_3FS0_0013FS00.84950UAA/GAN relatedA+BRNA (10-mer) + RNA (11-mer)U46G47A48G49*C-1G1G2A3A4cWWnthHtHScWW
16 IL_4A1B_0264A1B0.909901 LSU rRNAU571G572A573G574*C594A595A596A597A598cWWntSHtHScWW
17 IL_1GID_0031GID0.89170AP4-P6 RNA RIBOZYME DOMAINU205A206A207C208*G112A113A114A115G116ncWWtSHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CACC*GCAAG4
UGAG*CGGAA3
UAAC*GAAAG3
GCCC*GUAAC1
UUAC*GGAAUA1
UGAG*CAAAG1
AAAAU*ACUU1
UAAAUA*UGAAG1
UGAG*CAGAG1
UGAG*CAAAA1
Non-Watson-Crick part of the motif
SequenceCounts
AC*CAA4
GA*GGA3
AA*AAA3
GA*AAA2
CC*UAA1
UA*GAAU1
AAA*CU1
AAAU*GAA1
GA*AGA1

Release history

Release0.6
Date2012-04-02
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_31555.1Only in the parent motif
IL_37996.1
Compare		IL_1GID_010, IL_1X8W_002, IL_3G78_010, IL_3FTM_002, IL_3FTM_001, IL_1GID_003IL_3LOA_001, IL_2XZM_041, IL_4A1B_026, IL_2XZM_039, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_3BNQ_002, IL_4A1B_120, IL_3BNQ_008IL_3O58_130
IL_62873.1
Compare		IL_3BNT_005, IL_2XZM_039, IL_3BNQ_002, IL_3BNQ_008, IL_3BNT_002IL_3LOA_001, IL_3G78_010, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_4A1B_022, IL_3FS0_001, IL_2XZM_041, IL_3FTM_002, IL_3FTM_001, IL_4A1B_120, IL_1GID_003IL_1Y0Q_002, IL_1U6B_004, IL_3O58_027
IL_68211.1
Compare		IL_3LOA_001, IL_2XZM_041IL_3BNQ_008, IL_1GID_010, IL_4A1B_026, IL_2XZM_039, IL_1X8W_002, IL_3BNT_002, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3FTM_002, IL_3G78_010, IL_3FTM_001, IL_3BNQ_002, IL_4A1B_120, IL_1GID_003IL_1NUJ_004, IL_429D_002, IL_1NUJ_001, IL_1NUJ_002, IL_1NUJ_003, IL_429D_001
IL_29920.1
Compare		IL_3FS0_001IL_3LOA_001, IL_2XZM_041, IL_1GID_010, IL_4A1B_026, IL_2XZM_039, IL_1X8W_002, IL_3BNT_002, IL_4A1B_022, IL_3BNT_005, IL_3FTM_002, IL_3G78_010, IL_3FTM_001, IL_3BNQ_002, IL_4A1B_120, IL_1GID_003, IL_3BNQ_008

Children motifs

Child motifCommon motif instancesOnly in IL_31555.1Only in the child motif
IL_31555.2
Compare		IL_3LOA_001, IL_3G78_010, IL_1GID_010, IL_4A1B_026, IL_2XZM_039, IL_1X8W_002, IL_3FTM_001, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_2XZM_041, IL_4A1B_120, IL_1GID_003, IL_3BNQ_002IL_3BNQ_008, IL_3FTM_002
Annotations
  • (12)
  • UAA/GAN related (3)
  • Tandem non-canonical cWW pairs (2)
    • Basepair signature
    09_cWW-tSH,cWW-tHS-cWW
    Heat map statistics
    Min 0.00 | Avg 0.57 | Max 0.98
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