Motif IL_39521.2 Version IL_39521.2 of this group appears in releases 3.12 to 3.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6	7-8
1	IL_4IOA_026	4IOA	0.5905	5x5 Sarcin-Ricin with intercalated A; G-bulge	X	LSU rRNA	C	927	G	928	A	929	A	930	G	931	*	U	871	G	872	U	873	A	874	G	875	cWW	tSH	tHW		cWW	ncSH
2	IL_5J7L_300	5J7L	0.4475	tSH-tHW-tHS	DA	LSU rRNA	U	1513	G	1514	A	1515	G	1516	G	1517	*	U	1474	G	1475	U	1476	A	1477	G	1478	cWW	tSH	tHW	tHS	cWW
3	IL_2QWY_007	2QWY	0.4868	tSH-tHW-tHS	C	SAM-II riboswitch	A	46	A	47	A	48	A	49	G	50	*	C	16	G	17	U	18	A	19	U	20	cWW	tSH	tHW	tHS	cWW
4	IL_4V9F_055	4V9F	0.2897	tSH-tHW-tHS	0	LSU rRNA	U	1639	C	1640	A	1641	A	1642	C	1643	*	G	1542	G	1543	U	1544	C	1545	G	1546	cWW	tSH	tHW	tHS	cWW
5	IL_5J7L_037	5J7L	0.1703	tSH-tHW-tHS	AA	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH	tHW	tHS	cWW
6	IL_4LFB_033	4LFB	0.1553	tSH-tHW-tHS	A	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH	tHW	tHS	cWW
7	IL_4V88_436	4V88	0.0000	tSH-tHW-tHS	A6	SSU rRNA	C	990	G	991	A	992	A	993	G	994	*	C	1010	G	1011	U	1012	A	1013	G	1014	cWW	tSH	tHW	tHS	cWW
8	IL_4V88_418	4V88	0.1589	tSH-tHW-tHS	A6	SSU rRNA	U	968	C	969	A	970	A	971	G	972	*	C	627	G	628	U	629	A	630	G	631	cWW	tSH	tHW	tHS	cWW
9	IL_4LFB_023	4LFB	0.1872	tSH-tHW-tHS	A	SSU rRNA	U	757	G	758	A	759	G	760	G	761	*	U	580	G	581	U	582	A	583	G	584	cWW	tSH	tHW	tHS	cWW
10	IL_5J7L_027	5J7L	0.2117	tSH-tHW-tHS	AA	SSU rRNA	U	757	C	758	A	759	G	760	G	761	*	C	580	G	581	C	582	A	583	G	584	cWW	tSH	tHW	tHS	cWW
11	IL_4V9F_022	4V9F	0.2455	tSH-tHW-tHS	0	LSU rRNA	C	719	G	720	A	721	G	722	G	723	*	C	705	G	706	C	707	A	708	G	709	cWW	tSH	tHW	tHS	cWW
12	IL_4IOA_051	4IOA	0.2877	tSH-tHW-tHS	X	LSU rRNA	U	1370	G	1371	A	1372	G	1373	G	1374	*	C	1383	G	1384	C	1385	A	1386	G	1387	cWW	tSH	tHW	ntHS	cWW	ncSH
13	IL_5J7L_293	5J7L	0.2308	tSH-tHW-tHS	DA	LSU rRNA	C	1357	G	1358	A	1359	G	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW	tSH	tHW	tHS	cWW
14	IL_4WF9_052	4WF9	0.4436	tSH-tHW-tHS	X	LSU rRNA	U	1394	G	1395	A	1396	G	1397	G	1398	*	C	1407	G	1408	U	1409	A	1410	G	1411	cWW		ntHW	ntHS	cWW
15	IL_4Y4O_229	4Y4O	0.5131	tSH-tHW-tHS	2A	LSU rRNA	U	1357	G	1358	A	1359	A	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW	tSH		tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAGG*UGUAG	2
CAAAC*GGUAG	2
CGAAG*UGUAG	1
AAAAG*CGUAU	1
UCAAC*GGUCG	1
CGAAG*CGUAG	1
UCAAG*CGUAG	1
UCAGG*CGCAG	1
CGAGG*CGCAG	1
UGAGG*CGCAG	1
CGAGG*CGUAG	1
UGAGG*CGUAG	1
UGAAG*CGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAG*GUA	4
GAA*GUA	3
AAA*GUA	3
GAG*GCA	2
CAA*GUC	1
CAA*GUA	1
CAG*GCA	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tSH-tHW-tHS (14)
5x5 Sarcin-Ricin with intercalated A; G-bulge (1)
Basepair signature: cWW-tSH-tHW-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.38 | Max 0.76

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