Motif IL_40239.1 Version IL_40239.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NUV_002 | 1NUV | 0.6391 | 1 | C+D | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
| 2 | IL_1FJG_008 | 1FJG | 0.6184 | 0 | A | SSU rRNA | C | 132 | U | 133 | A | 134 | C | 135 | C | 136 | * | G | 227 | A | 228 | U | 229 | G | 230 | cWW | cwW | cWW |
| 3 | IL_1NUV_001 | 1NUV | 0.0000 | 1 | A+B | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
| 4 | IL_1NUV_004 | 1NUV | 0.0366 | 1 | G+H | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
| 5 | IL_1NUV_003 | 1NUV | 0.2012 | 1 | E+F | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
| 6 | IL_429D_002 | 429D | 0.4187 | 1 | C+D | RNA (13-mer) + RNA (11-mer) | C | 122 | C | 123 | A | 125 | G | 126 | C | 127 | * | G | 143 | G | 144 | A | 145 | G | 146 | cWW | ncWW | cWW |
| 7 | IL_429D_001 | 429D | 0.4221 | 1 | A+B | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | cWW | |
| 8 | IL_2AW7_010 | 2AW7 | 0.4406 | 0 | A | SSU rRNA | C | 132 | U | 133 | G | 134 | C | 135 | C | 136 | * | G | 227 | A | 228 | U | 229 | G | 230 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGAGC*GGAG | 6 |
| CUACC*GAUG | 1 |
| CUGCC*GAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAG*GA | 6 |
| UAC*AU | 1 |
| UGC*AU | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_40239.1 | Only in the parent motif |
|---|---|---|---|
| IL_68211.1 Compare | IL_429D_001, IL_429D_002 | IL_1NUV_001, IL_1NUV_002, IL_1NUV_003, IL_1NUV_004, IL_2AW7_010, IL_1FJG_008 | IL_3LOA_001, IL_1NUJ_004, IL_1NUJ_001, IL_1NUJ_002, IL_1NUJ_003, IL_2XZM_041 |
| IL_47671.1 Compare | IL_2AW7_010 | IL_1NUV_003, IL_429D_001, IL_1NUV_001, IL_1NUV_002, IL_429D_002, IL_1NUV_004, IL_1FJG_008 | IL_2XZM_052, IL_1S72_037 |
| IL_76093.1 Compare | IL_1FJG_008 | IL_1NUV_003, IL_429D_001, IL_1NUV_001, IL_1NUV_002, IL_429D_002, IL_1NUV_004, IL_2AW7_010 |
Children motifs
| Child motif | Common motif instances | Only in IL_40239.1 | Only in the child motif |
|---|---|---|---|
| IL_83451.2 Compare | IL_2AW7_010, IL_1FJG_008 | IL_1NUV_003, IL_429D_001, IL_1NUV_001, IL_1NUV_002, IL_429D_002, IL_1NUV_004 | IL_2XZM_084, IL_3CUN_001, IL_3U5F_081, IL_1FJG_055, IL_2AW7_061 |
| IL_71288.1 Compare | IL_429D_002, IL_1NUV_003 | IL_429D_001, IL_1NUV_001, IL_1NUV_002, IL_1NUV_004, IL_2AW7_010, IL_1FJG_008 | IL_3MEI_004, IL_2O3V_003, IL_3V2F_105 |
| IL_48285.1 Compare | IL_1NUV_002 | IL_1NUV_003, IL_429D_001, IL_1NUV_001, IL_429D_002, IL_1NUV_004, IL_2AW7_010, IL_1FJG_008 | IL_2QBG_108 |
- Annotations
-
- (8)
- Basepair signature
- 09_cWW-bif---cWW
- Heat map statistics
- Min 0.02 | Avg 0.40 | Max 0.81
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