Motif IL_47174.10 Version IL_47174.10 of this group appears in releases 1.12 to 1.12

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-5	1-6	2-3	2-5	3-4	3-5
1	IL_3LOA_003	3LOA	0.7581	1	Decoding loop with one bulged A	B+A	RNA (23-mer)	G	1491	A	1493	G	1494	*	C	1407	A	1408	C	1409		cWW			cWW
2	IL_1O9M_003	1O9M	0.6714	1		A+B	EUBACTERIAL A-SITE	G	1491	A	1493	G	1494	*	C	1407	A	1408	C	1409		cWW			cWW
3	IL_2AW7_063	2AW7	0.5303	1		A	16S ribosomal RNA	G	1491	A	1492	G	1494	*	C	1407	A	1408	C	1409		ncWW			cWW
4	IL_3U5F_065	3U5F	0.5403	0		6	18S rRNA	A	1234	C	1235	A	1236	*	U	1249	U	1250	U	1251		cWW			cWW
5	IL_3GLP_001	3GLP	0.3305	0		A+B	RNA (8-mer)	C	2	U	3	G	4	*	C	5\|\|A	U	6	G	7		cWW			cWW
6	IL_4IOA_109	4IOA	0.4214	0	Isolated non-canonical cWW pair (H)	Y	5S rRNA	U	82	C	83	G	84	*	C	97	C	98	G	99		cWW		cBW	cWW
7	IL_3U5F_087	3U5F	0.3575	0		6	18S rRNA	U	1665	U	1666	A	1667	*	U	1734	U	1735	G	1736		cWW			cWW
8	IL_4IOA_044	4IOA	0.3804	0	Isolated non-canonical cWW pair (H)	X	LSU rRNA	C	1252	C	1253	G	1254	*	C	1218	C	1219	G	1220		cWW		ncBW	cWW
9	IL_4A1B_013	4A1B	0.3517	0		1	26S RRNA	C	422	U	423	G	424	*	C	656	U	657	G	658		cWW			cWW
10	IL_3U5H_008	3U5H	0.2351	0		5	25S rRNA	C	125	U	126	G	127	*	C	141	C	142	G	143		cWW		cWW	cWW
11	IL_1S72_024	1S72	0.2552	0	Isolated non-canonical cWW pair (H)	0	LSU rRNA	C	899	U	900	G	901	*	C	763	C	764	G	765		cWW		cWW	cWW
12	IL_3RW6_004	3RW6	0.2485	0	Isolated non-canonical cWW pair	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	C	33	U	34	G	35	*	C	24	C	25	G	26		cWW		cWW	cWW
13	IL_4BPP_070	4BPP	0.3503	1		A	18S RRNA	C	1311	G	1313	C	1314	*	G	1353	A	1354	G	1355		cWW		cWW	cWW
14	IL_3U5F_072	3U5F	0.3267	1		6	18S rRNA	C	1339	A	1341	C	1342	*	G	1383	A	1384	G	1385		cWW		ncwW	cWW
15	IL_4BPP_058	4BPP	0.2943	0		A	18S RRNA	C	1145	C	1146	U	1147	*	G	1435	C	1436	G	1437		cWW		ncWB	cWW
16	IL_1FJG_044	1FJG	0.4448	0		A	SSU rRNA	G	1061	U	1062	C	1063	*	G	1193	U	1194	C	1195		cWW		cwW	cWW
17	IL_3U5H_109	3U5H	0.3871	0		5	25S rRNA	G	2824	C	2825	U	2826	*	G	2863	A	2864	U	2865		cWW		cWWa	cWW
18	IL_4A1B_107	4A1B	0.3973	0		1	26S RRNA	G	2812	C	2813	U	2814	*	G	2851	A	2852	U	2853		cWW		cWWa	cWW
19	IL_4A1B_015	4A1B	0.3875	0		1	26S RRNA	G	443	A	444	C	445	*	G	532	G	533	U	534		cWW		ncWW	cWW
20	IL_4M6D_011	4M6D	0.2903	0	Isolated non-canonical cWW pair	H	aptamer	G	12	G	13	C	14	*	G	46	A	47	C	48		cWW		cWW	ncWW
21	IL_4A1B_071	4A1B	0.2319	0		1	26S RRNA	A	1685	G	1686	C	1687	*	G	1812	A	1813	U	1814		cWW		cWW	cWW
22	IL_4M4O_002	4M4O	0.2443	0	Isolated non-canonical cWW pair	B	RNA (59-MER)	G	12	G	13	C	14	*	G	46	A	47	C	48		cWW		cWW	cWW
23	IL_3U5H_022	3U5H	0.3278	0		5	25S rRNA	G	792	C	793	U	794	*	G	668	U	669	C	670		cWW		cWW	cWW
24	IL_4IOA_019	4IOA	0.2693	0	Isolated non-canonical cWW pair (H)	X	LSU rRNA	G	767	U	768	C	769	*	G	754	C	755	C	756		cWW		cWW	cWW
25	IL_4BPP_037	4BPP	0.2868	0		A	18S RRNA	A	665	A	666	C	667	*	G	641	G	642	U	643		cWW		cWW	cWW	ncWW
26	IL_3U5H_076	3U5H	0.3066	0		5	25S rRNA	G	1661	G	1662	C	1663	*	G	1786	A	1787	C	1788		cWW		cWW	cWW
27	IL_3IVK_004	3IVK	0.3310	0		C	class I ligase product	A	102	A	103	C	104	*	G	87	G	88	U	89		cWW		cWW	cWW
28	IL_3U5F_089	3U5F	0.3547	0		6	18S rRNA	G	1672	G	1673	C	1674	*	G	1727	A	1728	C	1729		cWW		cWW	cWW
29	IL_1FJG_062	1FJG	0.3412	0		A	SSU rRNA	G	1435	U	1436	C	1437	*	G	1464	C	1465	C	1466		cWW		cWW	cWW
30	IL_3U5H_051	3U5H	0.3157	0		5	25S rRNA	A	1120	U	1121	U	1122	*	A	1136	C	1137	U	1138		cWW		cWW	cWW
31	IL_4A1B_052	4A1B	0.3064	0		1	26S RRNA	A	1147	U	1148	U	1149	*	A	1163	C	1164	U	1165		cWW		cWW	cWW
32	IL_4A1B_104	4A1B	0.2889	0		1	26S RRNA	G	2775	C	2776	U	2777	*	A	2758	A	2759	C	2760		cWW		cWWa	cWW
33	IL_3U5H_017	3U5H	0.3146	0		5	25S rRNA	U	429	U	430	U	431	*	A	628	U	629	A	630		cWW			cWW
34	IL_4BPP_088	4BPP	0.2558	0		A	18S RRNA	C	1644	C	1645	U	1646	*	A	1679	A	1680	G	1681		cWW		ncWWa	cWW
35	IL_2AW7_052	2AW7	0.4139	0		A	16S ribosomal RNA	G	1193	U	1194	C	1195	*	G	1061	U	1062	C	1063		cWW		cWw	cWW
36	IL_1O9M_004	1O9M	0.3716	0		A+B	EUBACTERIAL A-SITE	G	1494	U	1495	C	1496	*	G	1405	U	1406	C	1407		cWW		cWw	cWW
37	IL_4BPP_073	4BPP	0.3821	0		A	18S RRNA	C	1323	U	1324	G	1325	*	U	1341	U	1342	G	1343		cWW		cWw	cWW
38	IL_4FNJ_001	4FNJ	0.3392	0		A	RNA (35-MER)	C	1	U	2	G	3	*	C	33	U	34	G	35		cWW		cWw	cWW
39	IL_4IOA_010	4IOA	0.3028	0	Isolated non-canonical cWW pair (H)	X	LSU rRNA	A	584	U	585	G	586	*	C	573	C	574	U	575		cWW		cWW	cWW
40	IL_3V2F_015	3V2F	0.2847	0		A	23S Ribosomal RNA	A	575	U	576	G	577	*	C	564	C	565	U	566		cWW		cWW	cWW
41	IL_2QBG_018	2QBG	0.2891	0		B	23S rRNA	A	575	U	576	G	577	*	C	564	C	565	U	566		cWW		cWW	cWW
42	IL_4BPP_015	4BPP	0.2962	0		A	18S RRNA	A	201	U	202	U	203	*	A	254	C	255	U	256		cWW		cWW	cWW
43	IL_3U5F_015	3U5F	0.3094	0		6	18S rRNA	A	257	C	258	U	259	*	A	206	U	207	U	208		cWW		cWW	cWW
44	IL_3V2F_081	3V2F	0.3468	0		A	23S Ribosomal RNA	C	2108	U	2109	G	2110	*	C	2179	U	2180	G	2181		cWW		ncWw	cWW
45	IL_3RG5_001	3RG5	0.3838	0	Isolated non-canonical cWW pair (H)	A	Selenocysteine transfer RNA	A	5\|\|\|B	U	6	G	7	*	C	66	U	67	U	67\|\|\|A		cWW		cwW	cWW
46	IL_3UMY_001	3UMY	0.3198	0	Isolated non-canonical cWW pair (H)	B	LSU rRNA	A	2108	U	2109	G	2110	*	C	2179	U	2180	U	2181		cWW		cwW	cWW
47	IL_3U5F_043	3U5F	0.4099	1		6	18S rRNA	A	850	U	851	C	852	*	G	819	U	821	U	822		cWW		cwW	cWW
48	IL_4BPP_002	4BPP	0.3824	0		A	18S RRNA	A	23	C	24	A	25	*	U	594	A	595	U	596		cWW		cWW	cWW
49	IL_4A1B_115	4A1B	0.3390	0		1	26S RRNA	A	2914	C	2915	C	2916	*	G	2906	A	2907	U	2908		cWW		cWW	cWW
50	IL_4IOA_025	4IOA	0.3003	0		X	LSU rRNA	A	936	C	937	G	938	*	C	864	A	865	U	866		cWW		cWW	cWW
51	IL_3U5H_118	3U5H	0.3325	0		5	25S rRNA	A	2926	C	2927	C	2928	*	G	2918	A	2919	U	2920		cWW		cWW	cWW
52	IL_3MEI_002	3MEI	0.3214	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	13	C	14	C	15	*	G	8	C	9	C	10		cWW		ncWB	cWW
53	IL_1YZ9_002	1YZ9	0.2843	0	Isolated non-canonical cWW pair	F+E	RNA (11-mer)	A	15	C	16	U	17	*	A	4	C	5	U	6		cWW		ncWB	cWW
54	IL_1YZ9_001	1YZ9	0.3099	0	Isolated non-canonical cWW pair	C+D	RNA (11-mer)	A	4	C	5	U	6	*	A	15	C	16	U	17		cWW		ncWB	cWW
55	IL_3BNQ_006	3BNQ	0.3758	0		A+B	A site of human mitochondrial ribosome, A chain	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW		cwW	cWW
56	IL_1MFQ_002	1MFQ	0.3224	0	Isolated non-canonical cWW pair	A	SRP RNA	A	228	U	229	C	230	*	G	120	U	121	U	122		cWW		cwW	cWW
57	IL_1ZX7_002	1ZX7	0.3757	0		A+B	RNA (15-mer) + RNA (14-mer)	G	10	U	11	C	12	*	G	24	U	25	C	26		cWW		cwW	cWW
58	IL_1ZX7_008	1ZX7	0.3688	0		G+H	RNA (15-mer) + RNA (14-mer)	G	10	U	11	C	12	*	G	24	U	25	C	26		cWW		cwW	cWW
59	IL_2O3V_001	2O3V	0.3186	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW		cwW	cWW
60	IL_2O3X_004	2O3X	0.3604	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21		cWW		cwW	cWW
61	IL_4A1B_083	4A1B	0.3809	0		1	26S RRNA	G	1964	C	1965	U	1966	*	A	2102	A	2103	C	2104		cWW		cWW	cWW
62	IL_3U5H_116	3U5H	0.4051	0		5	25S rRNA	G	2912	C	2913	G	2914	*	C	2889	A	2890	U	2891		cWW		ncWWa	cWW
63	IL_4AOB_005	4AOB	0.3852	0	Isolated non-canonical cWW pair	A	SAM-I riboswitch	G	71	A	72	G	73	*	C	78	G	79	U	80		cWW		ncWW	cWW
64	IL_3TD0_005	3TD0	0.3944	1	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	16	A	17	G	19	*	C	30	G	31	C	32		cWW		cWW	cWW
65	IL_3TD0_002	3TD0	0.4058	1	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	39	A	40	G	42	*	C	7	G	8	C	9		cWW		cWW	cWW
66	IL_1NLC_001	1NLC	0.4050	1		A+B	HIV-1 DIS(MAL) genomic RNA	G	7	G	9	G	10	*	C	15	A	16	C	17		cWW		cWW	cWW
67	IL_1XJR_003	1XJR	0.3631	1	Isolated non-canonical cWW pair	A	s2m RNA	G	32	G	34	G	35	*	C	16	A	17	C	18		cWW		cWW	cWW
68	IL_1NLC_002	1NLC	0.3541	1		B+A	HIV-1 DIS(MAL) genomic RNA	G	7\|\|A	G	9\|\|A	G	10	*	C	15	A	16	C	17		cWW		cWW	cWW
69	IL_2QBG_030	2QBG	0.3216	0		B	23S rRNA	G	856	G	857	G	858	*	U	919	A	920	C	921		cWW		cWW	cWW
70	IL_1FJG_010	1FJG	0.2347	0	Isolated non-canonical cWW pair (H)	A	SSU rRNA	G	190\|\|\|K	U	190\|\|\|L	G	191	*	C	186	C	187	C	188		cWW		cWW	cWW
71	IL_3U5H_049	3U5H	0.2818	0		5	25S rRNA	G	1087	U	1088	G	1089	*	C	1069	U	1070	U	1071		cWW		ncWw	cWW
72	IL_3U5F_061	3U5F	0.2629	0		6	18S rRNA	G	1464	C	1465	G	1466	*	C	1173	C	1174	U	1175		cWW		ncBW	cWW
73	IL_4M4O_001	4M4O	0.2704	0	Isolated non-canonical cWW pair	B	RNA (59-MER)	A	52	C	53	G	54	*	C	6	A	7	U	8		cWW		cWWa	cWW
74	IL_3U5H_149	3U5H	0.2780	1		7	5S rRNA	A	84	G	85	G	87	*	C	94	A	95	U	96		cWW		cWW	cWW
75	IL_1FJG_058	1FJG	0.3332	0	Isolated non-canonical cWW pair (H)	A	SSU rRNA	G	1486	G	1487	G	1488	*	C	1412	A	1413	U	1414		cWW		cWW	cWW
76	IL_2AW7_064	2AW7	0.2797	0		A	16S ribosomal RNA	G	1486	G	1487	G	1488	*	C	1412	A	1413	U	1414		cWW		cWW	cWW
77	IL_4A1B_048	4A1B	0.2559	0		1	26S RRNA	A	1035	G	1036	A	1037	*	U	1065	A	1066	U	1067		ncWW		ncWW	cWW
78	IL_3U5F_084	3U5F	0.2300	0		6	18S rRNA	U	1650	A	1651	C	1652	*	G	1748	A	1749	A	1750		cWW		cWw	cWW
79	IL_1KFO_002	1KFO	0.2277	0	Isolated non-canonical cWW pair	A	RNA (19-mer)	G	11\|\|\|\|8_555	A	12\|\|\|\|8_555	G	13\|\|\|\|8_555	*	C	6	C	7	U	8		cWW		cWW	cWW
80	IL_1KFO_003	1KFO	0.2277	0	Isolated non-canonical cWW pair	A	RNA (19-mer)	G	11	A	12	G	13	*	C	6\|\|\|\|8_555	C	7\|\|\|\|8_555	U	8\|\|\|\|8_555		cWW		cWW	cWW
81	IL_1MWL_001	1MWL	0.2249	0		A+B	RNA (22-mer)	G	4	U	5	C	6	*	G	40	U	41	C	42		cWW		ncWw	cWW
82	IL_3TD1_006	3TD1	0.2332	0		B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21		cWW		ncWw	cWW
83	IL_3TD0_001	3TD0	0.2052	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW		ncWw	cWW
84	IL_1FJG_056	1FJG	0.2536	0		A	SSU rRNA	G	1405	U	1406	C	1407	*	G	1494	U	1495	C	1496		cWW		ncWw	cWW
85	IL_4BPP_082	4BPP	0.2359	0		A	18S RRNA	G	1614	U	1615	C	1616	*	G	1710	U	1711	C	1712		cWW		ncWw	cWW
86	IL_4BPP_079	4BPP	0.2017	0		A	18S RRNA	G	1518	U	1519	U	1520	*	A	1535	U	1536	C	1537		cWW			cWW
87	IL_2AW7_062	2AW7	0.1932	0		A	16S ribosomal RNA	G	1405	U	1406	C	1407	*	G	1494	U	1495	C	1496		cWW		ncWw	cWW
88	IL_3U5F_082	3U5F	0.2525	0		6	18S rRNA	G	1642	U	1643	C	1644	*	G	1757	U	1758	C	1759		cWW			cWW
89	IL_4A1B_028	4A1B	0.2525	0		1	26S RRNA	G	820	U	821	U	822	*	A	689	U	690	C	691		cWW		ncWw	cWW
90	IL_4BPP_034	4BPP	0.2287	0		A	18S RRNA	A	951	A	952	C	953	*	G	618	C	619	U	620		cWW		cWW	cWW
91	IL_3U5F_063	3U5F	0.3364	0		6	18S rRNA	G	1213	U	1214	C	1215	*	G	1448	U	1449	U	1450		cWW		ncWw	cWW
92	IL_1T0E_002	1T0E	0.3120	0	Isolated non-canonical cWW pair	C+A	RNA (17-mer)	G	14	U	15	C	16	*	G	10\|\|A	U	11	C	12		cWW		cWw	cWW
93	IL_1T0D_002	1T0D	0.2871	0		B+A	RNA (16-mer)	G	24	U	25	C	26	*	G	10	U	11	C	12		cWW		cWw	cWW
94	IL_4KYY_001	4KYY	0.2837	0	Isolated non-canonical cWW pair	A+B	RNA 17-mer	G	5	U	6	U	7	*	A	11	U	12	C	13		cWW		cWw	cWW
95	IL_4KYY_003	4KYY	0.2826	0	Isolated non-canonical cWW pair	B+A	RNA 17-mer	G	5	U	6	U	7	*	A	11	U	12	C	13		cWW		cWw	cWW
96	IL_2FQN_001	2FQN	0.2810	0		B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7		cWW		cWw	cWW
97	IL_3TD0_006	3TD0	0.2825	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		cWw	cWW
98	IL_2OE5_001	2OE5	0.2889	0	Isolated non-canonical cWW pair	A+B	RNA (16-mer) + RNA (17-mer)	G	1405	U	1406	C	1407	*	G	1494	U	1495	C	1496		cWW		cWw	cWW
99	IL_4K31_004	4K31	0.3459	0	Isolated non-canonical cWW pair	B+C	RNA (23-mer)	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW		cWw	cWW
100	IL_4K31_001	4K31	0.3453	0	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW		cWw	cWW
101	IL_3U5H_087	3U5H	0.3083	0		5	25S rRNA	A	2106	A	2107	C	2108	*	G	1940	C	1941	U	1942		cWW		cWW	cWW
102	IL_3U5F_034	3U5F	0.2861	0		6	18S rRNA	A	973	A	974	C	975	*	G	624	C	625	U	626		cWW		cWW	cWW
103	IL_1Z7F_001	1Z7F	0.2840	0	Isolated non-canonical cWW pair	A	RNA (16-mer)	A	10\|\|\|\|6_765	A	11\|\|\|\|6_765	U	12\|\|\|\|6_765	*	A	5	C	6	U	7		cWW		cWW	cWW
104	IL_1Z7F_002	1Z7F	0.2840	0	Isolated non-canonical cWW pair	A	RNA (16-mer)	A	10	A	11	U	12	*	A	5\|\|\|\|6_765	C	6\|\|\|\|6_765	U	7\|\|\|\|6_765		cWW		cWW	cWW
105	IL_405D_001	405D	0.2687	0		B+A	RNA (16-mer)	A	26	A	27	U	28	*	A	5	C	6	U	7		cWW		cWW	cWW
106	IL_405D_002	405D	0.2697	0		A+B	RNA (16-mer)	A	10	A	11	U	12	*	A	21	C	22	U	23		cWW		cWW	cWW
107	IL_3BNQ_001	3BNQ	0.2444	0		B+A	A site of human mitochondrial ribosome, A chain	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW		ncWw	cWW
108	IL_3U5H_121	3U5H	0.2771	0		5	25S rRNA	A	3040	U	3041	U	3042	*	A	3012	U	3013	U	3014		cWW		cWw	cWW
109	IL_2O3V_004	2O3V	0.2420	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		cWw	cWW
110	IL_2FQN_004	2FQN	0.2476	0		A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		cWw	cWW
111	IL_3BNP_001	3BNP	0.3498	0		B+A	A site of human mitochondrial ribosome, B chain	G	17	U	18	C	19	*	G	4	U	5	C	6		cWW		cWw	cWW
112	IL_3BNP_004	3BNP	0.3353	0		A+B	A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain	G	18	U	19	C	20	*	G	3	U	4	C	5		cWW		cWw	cWW
113	IL_3BNT_001	3BNT	0.3208	0	Isolated non-canonical cWW pair	A	A site of human mitochondrial ribosome	G	18\|\|\|\|4_665	U	19\|\|\|\|4_665	C	20\|\|\|\|4_665	*	G	4	U	5	C	6		cWW		cWw	cWW
114	IL_3BNT_006	3BNT	0.3207	0	Isolated non-canonical cWW pair	A	A site of human mitochondrial ribosome	G	18	U	19	C	20	*	G	4\|\|\|\|4_665	U	5\|\|\|\|4_665	C	6\|\|\|\|4_665		cWW		cWw	cWW
115	IL_3BNL_004	3BNL	0.3338	0		A+B	A site of bacterial ribosome	G	18	U	19	C	20	*	G	4	U	5	C	6		cWW		cWw	cWW
116	IL_3BNL_001	3BNL	0.3260	0		B+A	A site of bacterial ribosome	G	18	U	19	C	20	*	G	4	U	5	C	6		cWW		cWw	cWW
117	IL_3U5H_128	3U5H	0.3189	0		5	25S rRNA	U	3280	U	3281	U	3282	*	A	3168	U	3169	A	3170		cWW		cWw	cWW
118	IL_1S72_047	1S72	0.3183	0		0	LSU rRNA	C	1303	U	1304	C	1305	*	G	1349	U	1350	G	1351		cWW		cWw	cWW
119	IL_4A1B_041	4A1B	0.3175	0		1	26S RRNA	U	979	U	980	U	981	*	A	990	U	991	A	992		cWW		cWw	cWW
120	IL_3U5H_036	3U5H	0.2837	0		5	25S rRNA	U	954	U	955	U	956	*	A	965	U	966	A	967		cWW		cWw	cWW
121	IL_1U9S_007	1U9S	0.3032	0	Isolated non-canonical cWW pair	A	RIBONUCLEASE P	C	191	A	192	C	193	*	G	177	C	178	G	179		cWW		cWW	cWW
122	IL_1MZP_001	1MZP	0.3597	0	Isolated non-canonical cWW pair	B	fragment of 23S rRNA	C	50	U	51	U	52	*	A	4	U	5	G	6		cWW		cWw	cWW
123	IL_1U6B_005	1U6B	0.3029	0	Isolated non-canonical cWW pair	B	197-MER	C	100	U	101	U	102	*	A	117	U	118	G	119		cWW		cWw	cWW
124	IL_1ZEV_004	1ZEV	0.2837	0		A+B	RNA (18-mer)	C	10\|\|A	U	11\|\|A	G	12\|\|A	*	C	7\|\|A	U	8\|\|A	G	9\|\|A		cWW		ncWw	cWW
125	IL_1RPU_001	1RPU	0.2466	0	Isolated non-canonical cWW pair	D+C	RNA (21-mer)	U	9\|\|A	C	10\|\|A	A	11\|\|A	*	U	9\|\|A	C	10\|\|A	A	11\|\|A		cWW		ncBW	cWW
126	IL_3GLP_002	3GLP	0.2569	0		A+B	RNA (8-mer)	C	5	U	6	G	7	*	C	2\|\|A	U	3\|\|A	G	4				ncWw	cWW
127	IL_1UN6_005	1UN6	0.1985	0	Isolated non-canonical cWW pair	F	5S RIBOSOMAL RNA	C	95	U	96	G	97	*	C	79	U	80	G	81		cWW		ncWw	cWW
128	IL_4BPP_001	4BPP	0.2844	0		A	18S RRNA	U	596	U	597	A	598	*	U	21	U	22	A	23		cWW		cWw	cWW
129	IL_3SZX_001	3SZX	0.2213	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	13	U	14	G	15	*	C	7	U	8	G	9		cWW			cWW
130	IL_4E48_004	4E48	0.2313	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	11	U	12	G	13	*	C	28	U	29	G	30		cWW		ncWw	cWW
131	IL_4E48_002	4E48	0.2418	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	5	U	6	G	7	*	C	34	U	35	G	36		cWW			cWW
132	IL_4E48_001	4E48	0.2434	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	37	U	38	G	39	*	C	2	U	3	G	4		cWW			cWW
133	IL_4E48_003	4E48	0.2580	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	31	U	32	G	33	*	C	8	U	9	G	10		cWW			cWW
134	IL_4FNJ_002	4FNJ	0.2319	0		A	RNA (35-MER)	C	4	U	5	G	6	*	C	30	U	31	G	32		cWW			cWW
135	IL_4E59_001	4E59	0.1848	0	Isolated non-canonical cWW pair	A+B	RNA duplex containing CCG repeats	C	2	C	3	G	4	*	C	2	C	3	G	4		cWW		ncBW	cWW
136	IL_4E48_005	4E48	0.2872	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	25	U	26	G	27	*	C	14	U	15	G	16		cWW			cWW
137	IL_3SYW_001	3SYW	0.2739	0		A+B	RNA (19-mer)	C	7	U	8	G	9	*	C	13	U	14	G	15\|\|A		cWW		cWw	cWW
138	IL_3SYW_003	3SYW	0.2742	0		B+A	RNA (19-mer)	C	7	U	8	G	9	*	C	13	U	14	G	15\|\|A		cWW		cWw	cWW
139	IL_1ZEV_001	1ZEV	0.2520	0		A+B	RNA (18-mer)	C	1\|\|A	U	2\|\|A	G	3\|\|A	*	C	16\|\|A	U	17\|\|A	G	18\|\|A	ncWW	cWW		cWw	cWW
140	IL_4E48_006	4E48	0.1967	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	17	U	18	G	19	*	C	22	U	23	G	24		cWW		ncWw	cWW
141	IL_1ZEV_006	1ZEV	0.2512	0		A+B	RNA (18-mer)	C	16\|\|A	U	17\|\|A	G	18\|\|A	*	C	1\|\|A	U	2\|\|A	G	3\|\|A		cWW		ncWw	cWW
142	IL_3SZX_002	3SZX	0.1958	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	10	U	11	G	12	*	C	10	U	11	G	12		cWW		ncWw	cWW
143	IL_1ZEV_003	1ZEV	0.2637	0		B+A	RNA (18-mer)	C	10\|\|A	U	11\|\|A	G	12\|\|A	*	C	7\|\|A	U	8\|\|A	G	9\|\|A		cWW		ncwW	cWW
144	IL_4J5V_005	4J5V	0.2601	0		B	RNA (19-mer)	C	211	C	212	G	213	*	C	207\|\|\|\|4_555	A	208\|\|\|\|4_555	G	209\|\|\|\|4_555		cWW		ncWW	cWW
145	IL_4J5V_003	4J5V	0.2601	0		B	RNA (19-mer)	C	211\|\|\|\|4_555	C	212\|\|\|\|4_555	G	213\|\|\|\|4_555	*	C	207	A	208	G	209		cWW		ncWW	cWW
146	IL_1ZH5_001	1ZH5	0.2673	0	Isolated non-canonical cWW pair	C+D	RNA (9-mer)	C	3	U	4	G	5	*	C	3	U	4	G	5		cWW		ncwW	cWW
147	IL_1ZEV_005	1ZEV	0.1978	0		A+B	RNA (18-mer)	C	13\|\|A	U	14\|\|A	G	15\|\|A	*	C	4\|\|A	U	5\|\|A	G	6\|\|A		cWW		ncwW	cWW
148	IL_1ZEV_002	1ZEV	0.2352	0		A+B	RNA (18-mer)	C	4\|\|A	U	5\|\|A	G	6\|\|A	*	C	13\|\|A	U	14\|\|A	G	15\|\|A		cWW			cWW
149	IL_3SZX_003	3SZX	0.2299	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	7	U	8	G	9	*	C	13	U	14	G	15		cWW		ncWw	cWW
150	IL_3FO4_001	3FO4	0.2345	0		A	Guanine riboswitch C74U mutant	U	25	C	26	G	27	*	C	43	A	44	A	45		cWW		cWWa	cWW
151	IL_4BPP_056	4BPP	0.2372	0		A	18S RRNA	C	1595	C	1596	G	1597	*	C	1126	A	1127	G	1128		cWW		ncWWa	cWW
152	IL_4IOA_030	4IOA	0.2645	0	Isolated non-canonical cWW pair	X	LSU rRNA	G	963	A	964	G	965	*	U	974	C	975	C	976		cWW		cWW	cWW
153	IL_3V2F_034	3V2F	0.2598	0		A	23S Ribosomal RNA	G	952	A	953	G	954	*	U	963	C	964	C	965		cWW		cWW	cWW
154	IL_4A1B_034	4A1B	0.1972	0		1	26S RRNA	C	963	U	964	G	965	*	C	828	C	829	G	830		cWW		cWW	cWW
155	IL_3U5H_028	3U5H	0.1904	0		5	25S rRNA	C	938	U	939	G	940	*	C	803	C	804	G	805		cWW		cWW	cWW
156	IL_4IOA_013	4IOA	0.1557	0		X	LSU rRNA	C	819	U	820	A	821	*	U	685	C	686	G	687		cWW		cWW	cWW
157	IL_3V2F_017	3V2F	0.1386	0		A	23S Ribosomal RNA	C	806	U	807	G	808	*	C	672	C	673	G	674		cWW		cWW	cWW
158	IL_2QBG_020	2QBG	0.1231	0		B	23S rRNA	C	806	U	807	G	808	*	C	672	C	673	G	674		cWW		cWW	cWW
159	IL_157D_002	157D	0.0874	0		B+A	RNA (12-mer)	C	15	G	16	A	17	*	U	8	A	9	G	10		cWW		cWW	cWW
160	IL_2Q1R_001	2Q1R	0.0845	0		A	RNA (12-mer)	C	1003	G	1004	A	1005	*	U	1008\|\|\|\|2_755	A	1009\|\|\|\|2_755	G	1010\|\|\|\|2_755		cWW		cWW	cWW
161	IL_2Q1R_002	2Q1R	0.0845	0		A	RNA (12-mer)	C	1003\|\|\|\|2_755	G	1004\|\|\|\|2_755	A	1005\|\|\|\|2_755	*	U	1008	A	1009	G	1010		cWW		cWW	cWW
162	IL_157D_001	157D	0.0000	0		A+B	RNA (12-mer)	C	3	G	4	A	5	*	U	20	A	21	G	22		cWW		cWW	cWW
163	IL_3SYW_002	3SYW	0.1642	0		B+A	RNA (19-mer)	C	10	U	11	G	12	*	C	10	U	11	G	12		cWW		ncwW	cWW
164	IL_3CUN_002	3CUN	0.1530	0		C	RNA (92-MER)	U	57	G	58	G	59	*	C	87	A	88	G	89		ncWW		cWW	cWW
165	IL_5MSF_001	5MSF	0.2111	1	Isolated non-canonical cWW pair	R	RNA (18-mer)	G	3\|\|\|\|P_1	G	4\|\|\|\|P_1	G	6\|\|\|\|P_1	*	C	13\|\|\|\|P_1	A	14\|\|\|\|P_1	C	15\|\|\|\|P_1		cWW		cWW	cWW
166	IL_3D0U_006	3D0U	0.1752	0	Isolated non-canonical cWW pair	A	Lysine Riboswitch RNA	G	112	G	113	G	114	*	C	134	A	135	C	136		cWW		cWW	cWW
167	IL_3DIR_006	3DIR	0.1734	0		A	RNA (174-MER)	G	115	G	116	G	117	*	C	137	A	138	C	139		cWW		cWW	cWW
168	IL_3U5H_133	3U5H	0.1723	0		5	25S rRNA	G	3252	G	3253	G	3254	*	C	3233	A	3234	C	3235		cWW		cWW	cWW
169	IL_3U5H_044	3U5H	0.1714	0		5	25S rRNA	A	1009	G	1010	A	1011	*	U	1039	A	1040	U	1041		cWW		cWW	cWW
170	IL_1FJG_006	1FJG	0.2042	0	Isolated non-canonical cWW pair (H)	A	SSU rRNA	C	99	A	101	G	102	*	C	67	G	68	G	69		cWW		cWW	cWW
171	IL_3U5F_002	3U5F	0.2216	0		6	18S rRNA	U	35	C	36	U	37	*	A	471	U	472	A	473		cWW		cWW	cWW
172	IL_3TD1_001	3TD1	0.2667	0		B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7		cWW		ncwW	cWW
173	IL_1MWL_004	1MWL	0.2887	0		A+B	RNA (22-mer)	G	18\|\|A	U	19	C	20	*	G	26	U	27	C	28		cWW		ncwW	cWW
174	IL_2ZKO_001	2ZKO	0.2688	0	Isolated non-canonical cWW pair	D+C	RNA (21-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11		cWW			cWW
175	IL_4BPP_068	4BPP	0.3097	0		A	18S RRNA	U	1262	G	1263	G	1264	*	C	1295	G	1296	A	1297		cWW			cWW
176	IL_4J5V_001	4J5V	0.4416	0		B	RNA (19-mer)	C	217\|\|\|\|4_555	C	218\|\|\|\|4_555	G	219\|\|\|\|4_555	*	C	201	A	202	G	203		cWW		cWW
177	IL_4J5V_007	4J5V	0.4416	0		B	RNA (19-mer)	C	217	C	218	G	219	*	C	201\|\|\|\|4_555	A	202\|\|\|\|4_555	G	203\|\|\|\|4_555		cWW		cWW
178	IL_4J5V_006	4J5V	0.3578	0		B	RNA (19-mer)	C	214	C	215	G	216	*	C	204\|\|\|\|4_555	A	205\|\|\|\|4_555	G	206\|\|\|\|4_555		cWW		cWW	cWW
179	IL_4J5V_002	4J5V	0.3578	0		B	RNA (19-mer)	C	214\|\|\|\|4_555	C	215\|\|\|\|4_555	G	216\|\|\|\|4_555	*	C	204	A	205	G	206		cWW		cWW	cWW
180	IL_3U5F_036	3U5F	0.3672	0		6	18S rRNA	C	646	G	647	G	648	*	C	686	G	687	G	688		cWW			cWW
181	IL_3U5F_050	3U5F	0.3647	0		6	18S rRNA	U	917	U	918	A	919	*	U	893	U	894	G	895		ncWW		cWw	cWW
182	IL_2QBG_034	2QBG	0.4496	0		B	23S rRNA	A	905	U	906	G	907	*	U	870	U	871	U	872		cWW		ncWw	cWW
183	IL_4A1B_027	4A1B	0.5103	1		1	26S RRNA	C	577	G	578	G	580	*	C	589	A	590	G	591		cWW			cWW
184	IL_4K31_003	4K31	0.4955	1	Isolated non-canonical cWW pair	B+C	RNA (23-mer)	A	16	A	17	G	19	*	C	7	G	8	U	9		cWW		cWW	cWW
185	IL_4K31_002	4K31	0.5134	1	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	A	16	A	17	G	19	*	C	7	G	8	U	9		cWW		cWW	cWW
186	IL_4BPP_083	4BPP	0.6441	1		A	18S RRNA	G	1707	A	1708	G	1710	*	C	1616	G	1617	C	1618		cWW		ncWW	cWW
187	IL_2QEK_001	2QEK	0.6137	1		A+B	HIV-1 subtype F DIS genomic RNA	G	7	A	8	G	10	*	C	15	A	16	C	17		cWW		cwW	cWW
188	IL_1U6B_001	1U6B	0.6105	1	Isolated non-canonical cWW pair	B	197-MER	G	19	C	20	G	22	*	C	29	A	30	C	31		cWW		ncWW	cWW
189	IL_4A1B_061	4A1B	0.5917	1		1	26S RRNA	A	1454	U	1456	G	1457	*	C	1403	G	1404	U	1405		cWW		cSW	cWW
190	IL_3NJ7_002	3NJ7	0.5301	0		A+B	RNA (10-mer)	C	6	A	7	G	8	*	C	3	A	4	G	5		cWW			cWW
191	IL_3NJ6_001	3NJ6	0.5575	0		A	RNA (10-mer)	C	6\|\|\|\|6_555	A	7\|\|\|\|6_555	G	8\|\|\|\|6_555	*	C	3	A	4	G	5		cWW			cWW
192	IL_3NJ6_002	3NJ6	0.5576	0		A	RNA (10-mer)	C	6	A	7	G	8	*	C	3\|\|\|\|6_555	A	4\|\|\|\|6_555	G	5\|\|\|\|6_555		cWW			cWW
193	IL_4A1B_024	4A1B	0.5004	0		1	26S RRNA	A	610	A	611	C	612	*	G	555	A	556	U	557		cWW		ncwW	cWW
194	IL_4A1C_009	4A1C	0.4433	1		3	5S RRNA	C	92	G	93	C	94	*	G	82	G	83	G	85		cWW			cWW
195	IL_2QBG_096	2QBG	0.6794	2		B	23S rRNA	G	2574	C	2575	G	2578	*	C	2510	U	2511	C	2512		cWW		cWW	cWW
196	IL_3V2F_094	3V2F	0.6599	2		A	23S Ribosomal RNA	G	2574	C	2575	G	2578	*	C	2510	U	2511	C	2512		cWW		ncWW	cWW
197	IL_4IOA_091	4IOA	0.6934	2	Isolated non-canonical cWW with bulges (H)	X	LSU rRNA	G	2553	C	2554	G	2557	*	C	2489	U	2490	C	2491		cWW		ncWW	cWW
198	IL_3U5H_114	3U5H	0.7148	2		5	25S rRNA	G	2943	U	2944	G	2947	*	C	2879	U	2880	C	2881		cWW		cwW	cWW
199	IL_4A1B_112	4A1B	0.7394	2		1	26S RRNA	G	2931	U	2932	G	2935	*	C	2867	U	2868	C	2869		cWW		cwW	cWW
200	IL_4IOA_104	4IOA	0.7009	1		Y	5S rRNA	G	66	C	67	G	69	*	C	19	A	20	C	21		cWW		cWW	cWW
201	IL_1S72_095	1S72	0.6920	1	Isolated non-canonical cWW with bulges (H)	0	LSU rRNA	G	2900	C	2901	C	2903	*	G	2855	A	2856	C	2857		cWW		ncWW	cWW
202	IL_3KTW_002	3KTW	0.6467	1	Isolated non-canonical cWW with bulges	C	SRP RNA	A	177	U	178	C	180	*	G	152	G	153	U	154		cWW	ncSH	cWW	ncWW
203	IL_3U5F_041	3U5F	0.4982	0		6	18S rRNA	A	799	U	800	G	801	*	U	748	U	749	U	750		cWW		cwW	cWW
204	IL_3V2F_080	3V2F	0.5054	0		A	23S Ribosomal RNA	C	2085	U	2086	G	2087	*	U	2232	U	2233	G	2234		cWW		cwW	cWW
205	IL_2QBG_083	2QBG	0.5022	0		B	23S rRNA	C	2232	U	2233	G	2234	*	U	2085	U	2086	G	2087		cWW		cwW	cWW
206	IL_4IOA_078	4IOA	0.4829	0	Isolated non-canonical cWW pair (H)	X	LSU rRNA	C	2068	U	2069	G	2070	*	U	2211	U	2212	G	2213		cWW		cwW	cWW
207	IL_4BPP_038	4BPP	0.4882	1		A	18S RRNA	G	659	U	660	G	661	*	U	647	U	649	C	650		cWW		cwW	cWW
208	IL_4BPP_065	4BPP	0.6997	2		A	18S RRNA	A	1407	U	1408	G	1409	*	U	1244	A	1247	U	1248		cWW			cWW
209	IL_3U5F_067	3U5F	0.6987	2		6	18S rRNA	A	1436	U	1437	G	1438	*	U	1272	A	1275	U	1276		cWW		ncSW	cWW
210	IL_2AW7_049	2AW7	0.6796	2		A	16S ribosomal RNA	A	1204	U	1205	G	1206	*	U	1052	A	1055	U	1056		cWW			cWW
211	IL_1MFQ_003	1MFQ	0.4575	0	Isolated non-canonical cWW pair	A	SRP RNA	A	163	G	164	G	165	*	U	132	A	133	U	134		cWW		ncWW	cWW
212	IL_4IOA_054	4IOA	0.5835	1		X	LSU rRNA	G	1573	A	1574	G	1576	*	U	1447	A	1448	C	1449		cWW		ncWw	cWW
213	IL_3V2F_053	3V2F	0.5849	1		A	23S Ribosomal RNA	C	1557	A	1558	G	1560	*	U	1433	A	1434	G	1435		cWW		ntHW	cWW
214	IL_2QBG_085	2QBG	0.7011	0		B	23S rRNA	C	2179	U	2180	U	2181	*	A	2108	U	2109	G	2110		cWW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUC*GUC	33
CUG*CUG	26
CUG*CCG	7
CCG*CAG	7
GAAG*CAC	4
GGC*GAC	4
UUU*AUA	4
CUG*UUG	4
GUU*AUC	4
AAU*ACU	4
CGA*UAG	4
AUU*ACU	3
AUG*CCU	3
GAAG*CGC	3
GAGG*CAC	3
AAC*GCU	3
CUU*AUG	3
GGG*CAC	3
CAG*CAG	3
GCGAG*CUC	3
AUG*UGCAU	3
UUA*UUG	2
CCG*CCG	2
GCU*GAU	2
GUC*GCC	2
AAC*GGU	2
GCU*AAC	2
AUG*CUU	2
ACC*GAU	2
ACG*CAU	2
ACU*ACU	2
GGG*CAU	2
AGA*UAU	2
GAG*CCU	2
UUA*UUA	2
GAG*UCC	2
AUG*UUU	2
AAAG*CGU	2
GUGAG*CUC	2
ACA*UUU	1
UCG*CCG	1
CUGC*GAG	1
CUAC*GAG	1
CCU*GCG	1
GAC*GGU	1
AGC*GAU	1
GCU*GUC	1
CCU*AAG	1
ACU*AUU	1
AUC*GUUU	1
ACA*UAU	1
GCC*GCC	1
AUC*GUU	1
GCG*CAU	1
GAG*CGU	1
GGG*UAC	1
GUG*CCC	1
GUG*CUU	1
GCG*CCU	1
AGUG*CAU	1
UAC*GAA	1
GUC*GUU	1
AUU*AUU	1
CUC*GUG	1
CAC*GCG	1
UCA*UCA	1
UCG*CAA	1
CUA*UCG	1
UGG*CAG	1
GGAG*CAC	1
CAG*CGG	1
UCU*AUA	1
UGG*CGA	1
CGG*CGG	1
CGGG*CAG	1
GCCG*CAC	1
AGUG*CGU	1
AAC*GAU	1
CGC*GGUG	1
GCAG*CAC	1
GCAC*GAC	1
AUUC*GGU	1
GUG*UUUC	1
AGG*UAU	1
GACG*UAC	1
CAGG*UAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*U	87
C*A	19
G*A	19
U*C	17
A*C	12
C*C	9
A*G	5
AA*G	5
A*A	5
AA*A	4
C*U	4
AG*A	4
CGA*U	3
U*GCA	3
U*UU	2
G*G	2
UGA*U	2
CA*A	2
UG*A	1
UA*A	1
GU*A	1
GA*A	1
GG*A	1
CC*A	1
GU*G	1
G*GU	1
UU*G	1
AC*A	1

Release history

Release	1.12
Date	2014-03-01
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_47174.10	Only in the parent motif
IL_47174.9 Compare	IL_3KTW_002, IL_2AW7_052, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_4IOA_078, IL_1O9M_003, IL_3U5H_109, IL_1S72_047, IL_2QBG_020, IL_3SZX_001, IL_3U5H_076, IL_405D_002, IL_405D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4IOA_044, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_3V2F_053, IL_1T0E_002, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3GLP_001, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_4BPP_056, IL_4BPP_002, IL_2AW7_049, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3TD0_006, IL_3U5H_008, IL_4FNJ_002, IL_2QEK_001, IL_1FJG_044, IL_3U5F_043, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3TD0_002, IL_2O3V_001, IL_3U5H_087, IL_3NJ7_002, IL_3BNQ_001, IL_4BPP_073, IL_4BPP_070, IL_4K31_003, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4K31_004, IL_4IOA_104, IL_4A1B_061, IL_1MFQ_003, IL_3U5H_017, IL_4IOA_109, IL_4IOA_025, IL_4KYY_001, IL_4KYY_003, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_1XJR_003, IL_3UMY_001, IL_5MSF_001, IL_1ZX7_002, IL_4BPP_065, IL_3V2F_081, IL_3V2F_080, IL_4A1C_009, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_4IOA_030, IL_3U5H_028, IL_3U5F_089, IL_4AOB_005, IL_3BNQ_006, IL_1MFQ_002, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_157D_002, IL_2QBG_034, IL_1MWL_004, IL_3V2F_094, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_1UN6_005, IL_3U5H_036, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3V2F_015, IL_3DIR_006, IL_3V2F_017, IL_3LOA_003, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_4IOA_010, IL_3U5H_022, IL_3MEI_002, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_1FJG_006, IL_4A1B_034, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_4M6D_011, IL_3U5F_067, IL_3U5F_065, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_4A1B_071, IL_3U5H_049, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_4BPP_088, IL_4A1B_083, IL_3TD0_005, IL_1U6B_005, IL_3TD0_001, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_4BPP_037, IL_4BPP_038, IL_4BPP_034, IL_3U5H_114, IL_3V2F_034, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_3U5H_051, IL_2QBG_085, IL_4A1B_028, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_4A1B_104, IL_4M4O_002, IL_3FO4_001, IL_1S72_024, IL_4IOA_091, IL_2AW7_062	IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_4J5V_007, IL_4J5V_006, IL_4J5V_005

Children motifs

Child motif	Common motif instances	Only in IL_47174.10	Only in the child motif
IL_47174.11 Compare	IL_3KTW_002, IL_2AW7_052, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_4IOA_078, IL_1O9M_003, IL_3U5H_109, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_3U5H_076, IL_405D_002, IL_405D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4IOA_044, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_3V2F_053, IL_1T0E_002, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3GLP_001, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_4BPP_056, IL_4BPP_002, IL_2AW7_049, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3TD0_006, IL_3U5H_008, IL_4FNJ_002, IL_2QEK_001, IL_1FJG_044, IL_3U5F_043, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3TD0_002, IL_2O3V_001, IL_3U5H_087, IL_4K31_003, IL_3BNQ_001, IL_1S72_047, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4K31_004, IL_4IOA_104, IL_4A1B_061, IL_4J5V_007, IL_1MFQ_003, IL_3U5H_017, IL_4IOA_109, IL_4IOA_025, IL_4KYY_001, IL_4KYY_003, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_1XJR_003, IL_3UMY_001, IL_5MSF_001, IL_1ZX7_002, IL_4BPP_065, IL_3V2F_081, IL_3V2F_080, IL_4A1C_009, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_4IOA_030, IL_3U5H_028, IL_3U5F_089, IL_4AOB_005, IL_3BNQ_006, IL_1MFQ_002, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_157D_002, IL_2QBG_034, IL_1MWL_004, IL_3V2F_094, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_1UN6_005, IL_3U5H_036, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3V2F_015, IL_3DIR_006, IL_3V2F_017, IL_3LOA_003, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_4IOA_010, IL_3U5H_022, IL_3MEI_002, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_1FJG_006, IL_4A1B_034, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_4M6D_011, IL_3U5F_067, IL_3U5F_065, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_4A1B_071, IL_3U5H_049, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_4BPP_088, IL_4A1B_083, IL_3TD0_005, IL_1U6B_005, IL_3TD0_001, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_4BPP_037, IL_4BPP_038, IL_4BPP_034, IL_3U5H_114, IL_3V2F_034, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_3U5H_051, IL_2QBG_085, IL_4A1B_028, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_4A1B_104, IL_4M4O_002, IL_3FO4_001, IL_1S72_024, IL_4IOA_091, IL_2AW7_062		IL_4JK0_002, IL_4JK0_001, IL_4NGF_002, IL_4JK0_005, IL_4JK0_004

Annotations: (146)
Isolated non-canonical cWW pair (53)
Isolated non-canonical cWW pair (H) (11)
Isolated non-canonical cWW with bulges (H) (2)
Isolated non-canonical cWW with bulges (1)
Decoding loop with one bulged A (1)
Basepair signature: cWW-cWW-cWW
Heat map statistics: Min 0.00 | Avg 0.44 | Max 1.05

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reading 423 atoms

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423 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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Coloring options: Nucleotide numbers

Motif IL_47174.10 Version IL_47174.10 of this group appears in releases 1.12 to 1.12 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_47174.10 Version IL_47174.10 of this group appears in releases 1.12 to 1.12

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