Motif IL_47444.2 Version IL_47444.2 of this group appears in releases 0.7 to 0.9
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1D4R_002 | 1D4R | 0.9516 | 0 | Other IL | A+B | 29-MER OF MODIFIED SRP RNA HELIX 6 | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | * | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | cWW | cBW | cWB | cWW | |||
| 2 | IL_3U5H_127 | 3U5H | 0.7934 | 0 | 5 | 25S rRNA | C | 3161 | C | 3162 | A | 3163 | C | 3164 | A | 3165 | C | 3166 | * | G | 3284 | C | 3285 | G | 3286 | U | 3287 | G | 3288 | G | 3289 | ncWW | cWW | cWW | cWWa | ncWW | |||
| 3 | IL_3G78_007 | 3G78 | 0.9218 | 0 | A | Group II catalytic intron D1-D4-1 | U | 214 | A | 215 | C | 216 | A | 217 | G | 218 | A | 219 | * | U | 158 | A | 159 | G | 160 | G | 161 | U | 162 | A | 163 | cWW | ncWW | ncWW | ntHH | cWW | |||
| 4 | IL_1MFQ_007 | 1MFQ | 0.2033 | 0 | tSH-tHW-tHS-cWW | A | SRP RNA | C | 190 | C | 191 | A | 192 | G | 193 | G | 194 | U | 195 | * | G | 204 | A | 205 | G | 206 | C | 207 | A | 208 | G | 209 | cWW | tWH | ntSH | tHW | tHS | cWW | cWW |
| 5 | IL_1LNT_002 | 1LNT | 0.1799 | 0 | tSH-tHW-tHS-cWW | A+B | RNA (12-mer) | U | 4 | C | 5 | A | 6 | G | 7 | G | 8 | U | 9 | * | A | 16 | A | 17 | G | 18 | C | 19 | A | 20 | G | 21 | cWW | tSH | tHW | tHS | cWW | cWW | |
| 6 | IL_2PXV_002 | 2PXV | 0.1394 | 0 | B | 4.5 S RNA | U | 146 | C | 147 | A | 148 | G | 149 | G | 150 | U | 151 | * | A | 160 | A | 161 | G | 162 | C | 163 | A | 164 | G | 165 | cWW | ntWH | tSH | tHW | tHS | cWW | cWW | |
| 7 | IL_1DUH_002 | 1DUH | 0.0000 | 0 | A | 4.5S RNA DOMAIN IV | U | 45 | C | 46 | A | 47 | G | 48 | G | 49 | U | 50 | * | A | 59||||4_555 | A | 60||||4_555 | G | 61||||4_555 | C | 62||||4_555 | A | 63||||4_555 | G | 64||||4_555 | cWW | tSH | tHW | tHS | cWW | cWW | ||
| 8 | IL_1DUH_004 | 1DUH | 0.0000 | 0 | A | 4.5S RNA DOMAIN IV | U | 45||||4_555 | C | 46||||4_555 | A | 47||||4_555 | G | 48||||4_555 | G | 49||||4_555 | U | 50||||4_555 | * | A | 59 | A | 60 | G | 61 | C | 62 | A | 63 | G | 64 | cWW | tSH | tHW | tHS | cWW | cWW | ||
| 9 | IL_2XXA_015 | 2XXA | 0.2089 | 0 | G | SSRP RNA | U | 40 | C | 41 | A | 42 | G | 43 | A | 44 | G | 45 | * | C | 54 | A | 55 | G | 56 | C | 57 | A | 58 | G | 59 | cWW | ntSH | ntHW | tHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAGGU*AAGCAG | 3 |
| GGGAGC*GGGAGC | 1 |
| CCACAC*GCGUGG | 1 |
| UACAGA*UAGGUA | 1 |
| CCAGGU*GAGCAG | 1 |
| AAGCAG*UCAGGU | 1 |
| UCAGAG*CAGCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAGG*AGCA | 4 |
| GGAG*GGAG | 1 |
| CACA*CGUG | 1 |
| ACAG*AGGU | 1 |
| AGCA*CAGG | 1 |
| CAGA*AGCA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_47444.2 | Only in the parent motif |
|---|---|---|---|
| IL_47444.1 Compare | IL_2PXV_002, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_3G78_007, IL_3U5H_127, IL_2XXA_015, IL_1MFQ_007, IL_1D4R_002 | IL_2XXA_008 |
Children motifs
| Child motif | Common motif instances | Only in IL_47444.2 | Only in the child motif |
|---|---|---|---|
| IL_47444.3 Compare | IL_2PXV_002, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_3U5H_127, IL_2XXA_015, IL_1MFQ_007, IL_1D4R_002 | IL_3G78_007 | IL_4FAW_007 |
- Annotations
-
- tSH-tHW-tHS-cWW (2)
- Other IL (1)
- Basepair signature
- cWW-tSH-tWH-tHW-tHS-cWW-cWW
- Heat map statistics
- Min 0.14 | Avg 0.50 | Max 0.96
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