Motif IL_53448.1 Version IL_53448.1 of this group appears in releases 3.77 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1KXK_002 | 1KXK | 0.1742 | 1 | Receptor of 11-nt loop-receptor motif | A | ai5g group II Self-splicing intron | C | 15 | U | 16 | A | 17 | A | 18 | G | 19 | * | U | 54 | A | 55 | G | 57 | cWW | tWH | cSH | cWW |
| 2 | IL_5Y7M_005 | 5Y7M | 0.0990 | 1 | Receptor of 11-nt loop-receptor motif | D | RNA (52-MER) | C | 46 | U | 47 | A | 48 | A | 49 | G | 50 | * | U | 3 | A | 4 | G | 6 | cWW | tWH | cSH | cWW |
| 3 | IL_6WPI_002 | 6WPI | 0.0931 | 1 | Receptor of 11-nt loop-receptor motif | B | RNA (47-MER) | C | 18 | U | 19 | A | 20 | A | 21 | G | 22 | * | U | 33 | A | 34 | G | 36 | cWW | tWH | cSH | cWW |
| 4 | IL_6AZ4_002 | 6AZ4 | 0.0978 | 1 | Receptor of 11-nt loop-receptor motif | A | RNA (32-MER) | C | 13 | U | 14 | A | 15 | A | 16 | G | 17 | * | U | 28 | A | 29 | G | 31 | cWW | tWH | cSH | cWW |
| 5 | IL_5M0H_003 | 5M0H | 0.0843 | 1 | Receptor of 11-nt loop-receptor motif | A | ASH1 E3 (42 nt-TL/TLR) | C | 14 | U | 15 | A | 16 | A | 17 | G | 18 | * | U | 29 | A | 30 | G | 32 | cWW | tWH | cSH | cWW |
| 6 | IL_5XTM_001 | 5XTM | 0.0000 | 1 | Receptor of 11-nt loop-receptor motif | B | RNA (47-MER) | C | 41 | U | 42 | A | 43 | A | 44 | G | 45 | * | U | 3 | A | 4 | G | 6 | cWW | tWH | cSH | cWW |
| 7 | IL_4K27_004 | 4K27 | 0.0661 | 1 | Receptor of 11-nt loop-receptor motif | U | Myotonic Dystrophy Type 2 RNA | C | 19 | U | 20 | A | 21 | A | 22 | G | 23 | * | U | 34 | A | 35 | G | 37 | cWW | tWH | cSH | cWW |
| 8 | IL_5BTM_002 | 5BTM | 0.0654 | 1 | Receptor of 11-nt loop-receptor motif | A | RNA (55-mer) | C | 19 | U | 20 | A | 21 | A | 22 | G | 23 | * | U | 34 | A | 35 | G | 37 | cWW | tWH | cSH | cWW |
| 9 | IL_6DVK_001 | 6DVK | 0.0984 | 1 | Receptor of 11-nt loop-receptor motif | H | RNA (95-MER) | C | 85 | U | 86 | A | 87 | A | 88 | G | 89 | * | U | 6 | A | 7 | G | 9 | cWW | tWH | cSH | cWW |
| 10 | IL_2R8S_007 | 2R8S | 0.0850 | 1 | Receptor of 11-nt loop-receptor motif | R | P4-P6 RNA RIBOZYME DOMAIN | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | * | U | 247 | A | 248 | G | 250 | cWW | tWH | cSH | cWW |
| 11 | IL_1NBS_008 | 1NBS | 0.1802 | 1 | Receptor of 11-nt loop-receptor motif | B | RNase P class B | C | 146 | U | 147 | A | 148 | C | 149 | G | 150 | * | U | 159 | A | 160 | G | 162 | cWW | tWH | ncSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*UAUG | 10 |
| CUACG*UAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*AU | 10 |
| UAC*AU | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Receptor of 11-nt loop-receptor motif (11)
- Basepair signature
- cWW-tWH-cSH-cWW
- Heat map statistics
- Min 0.06 | Avg 0.12 | Max 0.21
Coloring options: