IL_56467.3

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	2-10	3-8	4-7	5-6
1	IL_4WF9_084	4WF9	0.7665	Other IL	X	LSU rRNA	A	2122	A	2123	U	2124	U	2125	C	2126	*	G	2217	G	2218	C	2219	U	2220	U	2221	cWW	ncWW		ncWW		cWW
2	IL_5J7L_056	5J7L	0.4210	Double sheared with non-canonical cWW	AA	SSU rRNA	C	1259	G	1260	A	1261	C	1262	C	1263	*	G	1272	C	1273	A	1274	A	1275	G	1276	cWW	tSH		tHS	ncBW	cWW
3	IL_4V9F_085	4V9F	0.3135	Double sheared with non-canonical cWW	0	LSU rRNA	C	2515	G	2516	A	2517	C	2518	C	2519	*	G	2501	C	2502	A	2503	A	2504	G	2505	cWW	tSH		ntHS	cBW	cWW
4	IL_1U6B_002	1U6B	0.3509	Double sheared with non-canonical cWW	B	197-MER	G	56	A	57	A	58	A	59	C	60	*	G	84	C	85	A	86	A	87	C	88	cWW	tSH		tHS	ncWW	cWW
5	IL_5J7L_274	5J7L	0.2989	Double sheared with non-canonical cWW	DA	LSU rRNA	C	898	A	899	A	900	C	901	C	902	*	G	875	C	876	A	877	A	878	G	879	cWW	tSH		ntHS	cBW	cWW
6	IL_4WFL_001	4WFL	0.3117	Double sheared with non-canonical cWW	A	LSRP RNA	C	91	G	92	A	93	C	94	A	95	*	U	72	C	73	G	74	A	75	G	76	cWW	tSH		tHS	cBW	cWW
7	IL_5J7L_338	5J7L	0.3381	Double sheared with non-canonical cWW	DA	LSU rRNA	C	2480	G	2481	A	2482	C	2483	G	2484	*	C	2466	C	2467	A	2468	A	2469	G	2470	cWW	tSH		ntHS	cBW	cWW
8	IL_4WF9_093	4WF9	0.3441	Double sheared with non-canonical cWW	X	LSU rRNA	C	2507	G	2508	A	2509	C	2510	G	2511	*	C	2493	C	2494	A	2495	A	2496	G	2497	cWW	ntSH		tHS	cBW	cWW
9	IL_4IOA_089	4IOA	0.3996	Triple sheared	X	LSU rRNA	C	2459	G	2460	G	2461	C	2462	G	2463	*	C	2445	C	2446	G	2447	A	2448	G	2449	cWW	tSH		ntHS	ncBW	cWW
10	IL_4Y4O_270	4Y4O	0.4181	Triple sheared	2A	LSU rRNA	C	2480	G	2481	G	2482	C	2483	G	2484	*	C	2466	C	2467	G	2468	A	2469	G	2470	cWW	tSH			cBW	cWW
11	IL_5TBW_106	5TBW	0.4645	Triple sheared	1	LSU rRNA	C	2849	G	2850	A	2851	C	2852	A	2853	*	U	2835	C	2836	A	2837	A	2838	G	2839	cWW	tSH		ntHS		cWW
12	IL_4YAZ_006	4YAZ	0.4321	Triple sheared	R	Cyclic di-GMP-I riboswitch	U	16	A	17	A	18	A	19	C	20	*	G	35	G	36	G	37	C	38	G	39	cWW	ntSH			tHS	cWW
13	IL_3MXH_002	3MXH	0.3819	Triple sheared	R	Cyclic di-GMP-I riboswitch	C	22	A	23	A	24	A	25	C	26	*	G	41	G	42	A	43	C	44	G	45	cWW	ntSH			tHS	cWW
14	IL_4WF9_074	4WF9	0.2874	Triple sheared	X	LSU rRNA	C	1909	G	1910	A	1911	A	1912	U	1913	*	A	1883	G	1884	G	1885	A	1886	G	1887	ncWW		cSW	tHS	ntHS	cWW
15	IL_5TBW_067	5TBW	0.1982	Triple sheared	1	LSU rRNA	U	1645	G	1646	A	1647	A	1648	U	1649	*	A	1806	G	1807	G	1808	A	1809	A	1810	cWW	tSH		tHS	tHS	cWW
16	IL_3IWN_002	3IWN	0.2994	Triple sheared	A	Cyclic di-GMP-I riboswitch	C	12	A	13	A	14	A	15	C	16	*	G	31	G	32	A	33	C	34	G	35	cWW	ntSH			tHS	cWW
17	IL_3IGI_002	3IGI	0.2425	Triple sheared	A	Group II catalytic intron D1-D4-3	C	70	U	71	A	72	A	73	C	74	*	G	113	G	114	A	115	C	116	G	117	cWW	ntSH			tHS	cWW
18	IL_4Y4O_248	4Y4O	0.0000	Triple sheared	2A	LSU rRNA	C	1882	G	1883	A	1884	A	1885	C	1886	*	G	1856	G	1857	G	1858	A	1859	G	1860	cWW	tSH		tHS	tHS	cWW
19	IL_4IOA_070	4IOA	0.1739	Triple sheared	X	LSU rRNA	C	1865	G	1866	A	1867	A	1868	A	1869	*	U	1848	G	1849	G	1850	A	1851	G	1852	cWW	ntSH		tHS	tHS	cWW
20	IL_2A64_006	2A64	0.2147	Triple sheared	A	RNase P class B	C	378	G	379	A	380	A	381	G	382	*	C	347	G	348	G	349	A	350	G	351	cWW			tHS	tHS	cWW
21	IL_2A64_005	2A64	0.2655	Triple sheared	A	RNase P class B	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301	cWW	tSH		ntHS	tHS	cWW
22	IL_5J7L_310	5J7L	0.2848	Triple sheared	DA	LSU rRNA	U	1720	G	1721	A	1722	G	1723	G	1724	*	U	1736	G	1737	G	1738	A	1739	G	1740	cWW	tSH		tHS	ntHS	cWW
23	IL_4WF9_024	4WF9	0.3992	Triple sheared	X	LSU rRNA	U	748	G	749	A	750	A	751	G	752	*	U	769	G	770	G	771	A	772	G	773	cWW			tHS	tHS	cWW
24	IL_4Y4O_198	4Y4O	0.4015	Triple sheared	2A	LSU rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	tSH		tHS	tHS	cWW
25	IL_5J7L_263	5J7L	0.4072	Triple sheared	DA	LSU rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	tSH		tHS	tHS	cWW
26	IL_5TBW_030	5TBW	0.4364	Triple sheared	1	LSU rRNA	U	834	G	835	A	836	A	837	G	838	*	U	855	G	856	G	857	A	858	G	859	cWW	tSH		tHS	tHS	cWW
27	IL_4V9F_027	4V9F	0.3903	Triple sheared	0	LSU rRNA	U	794	G	795	A	796	A	797	G	798	*	U	815	G	816	G	817	A	818	A	819	cWW	ntSH		tHS	tHS	cWW
28	IL_4V88_474	4V88	0.3693	Triple sheared	A6	SSU rRNA	A	1719	G	1720	A	1721	A	1722	U	1723	*	A	1678	G	1679	G	1680	A	1681	U	1682	cWW			tHS	tHS	cWW
29	IL_4WF9_019	4WF9	0.6284	AAA cross-strand stack	X	LSU rRNA	U	649	U	650	A	651	A	652	G	653	*	U	663	G	664	G	665	A	666	G	667	cWW	ntWW			tHS	cWW
30	IL_4Y4O_193	4Y4O	0.5394	AAA cross-strand stack	2A	LSU rRNA	U	606	U	607	A	608	A	609	G	610	*	C	618	G	619	G	620	A	621	G	622	cWW	ntWH			tHS	cWW
31	IL_5J7L_258	5J7L	0.5278	AAA cross-strand stack	DA	LSU rRNA	U	606	U	607	A	608	A	609	C	610	*	G	618	G	619	G	620	A	621	G	622	cWW	ntWH			tHS	cWW
32	IL_4V9F_020	4V9F	0.5205	AAA cross-strand stack	0	LSU rRNA	C	663	U	664	A	665	A	666	C	667	*	G	679	G	680	G	681	A	682	G	683	cWW	ntWH			tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAAG*UGGAG	4
CGACC*GCAAG	2
CGACG*CCAAG	2
CGGCG*CCGAG	2
CAAAC*GGACG	2
CGAAG*CGGAG	2
AAUUC*GGCUU	1
GAAAC*GCAAC	1
CAACC*GCAAG	1
CGACA*UCGAG	1
CGACA*UCAAG	1
UAAAC*GGGCG	1
CGAAU*AGGAG	1
UGAAU*AGGAA	1
CUAAC*GGACG	1
CGAAC*GGGAG	1
CGAAA*UGGAG	1
UGAGG*UGGAG	1
UGAAG*UGGAA	1
AGAAU*AGGAU	1
UUAAG*UGGAG	1
UUAAG*CGGAG	1
UUAAC*GGGAG	1
CUAAC*GGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GGA	12
GAC*CAA	5
UAA*GGA	4
GGC*CGA	2
AAA*GAC	2
AUU*GCU	1
AAA*CAA	1
AAC*CAA	1
GAC*CGA	1
AAA*GGC	1
UAA*GAC	1
GAG*GGA	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_56467.3 Version IL_56467.3 of this group appears in releases 3.12 to 3.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_56467.3 Version IL_56467.3 of this group appears in releases 3.12 to 3.17

Download

Csv

Json