IL_56467.6

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	2-10	3-8	4-7	5-6
1	IL_7A0S_013	7A0S	0.5807	AAA cross-strand stack	X	LSU rRNA	U	616	U	617	A	618	A	619	G	620	*	C	629	G	630	G	631	A	632	G	633	cWW				tHS	cWW
2	IL_4WF9_019	4WF9	0.6230	AAA cross-strand stack	X	LSU rRNA	U	649	U	650	A	651	A	652	G	653	*	U	663	G	664	G	665	A	666	G	667	cWW	ntWW			tHS	cWW
3	IL_7RQB_016	7RQB	0.5217	AAA cross-strand stack	1A	LSU rRNA	U	606	U	607	A	608	A	609	G	610	*	C	618	G	619	G	620	A	621	G	622	cWW	ntWH			tHS	cWW
4	IL_5J7L_258	5J7L	0.5312	AAA cross-strand stack	DA	LSU rRNA	U	606	U	607	A	608	A	609	C	610	*	G	618	G	619	G	620	A	621	G	622	cWW	ntWH			tHS	cWW
5	IL_4V9F_020	4V9F	0.5222	AAA cross-strand stack	0	LSU rRNA	C	663	U	664	A	665	A	666	C	667	*	G	679	G	680	G	681	A	682	G	683	cWW	ntWH			tHS	cWW
6	IL_3MXH_002	3MXH	0.3731	Triple sheared	R	c-di-GMP riboswitch	C	22	A	23	A	24	A	25	C	26	*	G	41	G	42	A	43	C	44	G	45	cWW	ntSH			tHS	cWW
7	IL_4YAZ_006	4YAZ	0.4201	Triple sheared	R	Cyclic di-GMP-I riboswitch	U	16	A	17	A	18	A	19	C	20	*	G	35	G	36	G	37	C	38	G	39	cWW	ntSH			tHS	cWW
8	IL_3IWN_002	3IWN	0.2817	Triple sheared	A	C-di-GMP riboswitch	C	12	A	13	A	14	A	15	C	16	*	G	31	G	32	A	33	C	34	G	35	cWW	ntSH			tHS	cWW
9	IL_5TBW_067	5TBW	0.1888	Triple sheared	1	LSU rRNA	U	1645	G	1646	A	1647	A	1648	U	1649	*	A	1806	G	1807	G	1808	A	1809	A	1810	cWW	tSH		tHS	tHS	cWW
10	IL_7RQB_075	7RQB	0.0000	Triple sheared	1A	LSU rRNA	C	1882	G	1883	A	1884	A	1885	C	1886	*	G	1856	G	1857	G	1858	A	1859	G	1860	cWW	tSH		tHS	tHS	cWW
11	IL_3IGI_002	3IGI	0.2372	Triple sheared	A	Group IIC intron	C	70	U	71	A	72	A	73	C	74	*	G	113	G	114	A	115	C	116	G	117	cWW	ntSH			tHS	cWW
12	IL_4WF9_074	4WF9	0.2749	Triple sheared	X	LSU rRNA	C	1909	G	1910	A	1911	A	1912	U	1913	*	A	1883	G	1884	G	1885	A	1886	G	1887	ncWW		cSW	tHS	ntHS	cWW
13	IL_7A0S_070	7A0S	0.2851	Triple sheared	X	LSU rRNA	C	1865	G	1866	A	1867	A	1868	A	1869	*	U	1848	G	1849	G	1850	A	1851	G	1852	cWW	ntSH			tHS	cWW
14	IL_2A64_006	2A64	0.2220	Triple sheared	A	ribonuclease P RNA	C	378	G	379	A	380	A	381	G	382	*	C	347	G	348	G	349	A	350	G	351	cWW			tHS	tHS	cWW
15	IL_2A64_005	2A64	0.2679	Triple sheared	A	ribonuclease P RNA	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301	cWW	tSH		ntHS	tHS	cWW
16	IL_5J7L_310	5J7L	0.2484	Triple sheared	DA	LSU rRNA	U	1720	G	1721	A	1722	G	1723	G	1724	*	U	1736	G	1737	G	1738	A	1739	G	1740	cWW	tSH		tHS	ntHS	cWW
17	IL_4WF9_024	4WF9	0.3604	Triple sheared	X	LSU rRNA	U	748	G	749	A	750	A	751	G	752	*	U	769	G	770	G	771	A	772	G	773	cWW			tHS	tHS	cWW
18	IL_7RQB_021	7RQB	0.3514	Triple sheared	1A	LSU rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	tSH		tHS	tHS	cWW
19	IL_5J7L_263	5J7L	0.3644	Triple sheared	DA	LSU rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	tSH		tHS	tHS	cWW
20	IL_5TBW_030	5TBW	0.3975	Triple sheared	1	LSU rRNA	U	834	G	835	A	836	A	837	G	838	*	U	855	G	856	G	857	A	858	G	859	cWW	tSH		tHS	tHS	cWW
21	IL_4V9F_027	4V9F	0.3476	Triple sheared	0	LSU rRNA	U	794	G	795	A	796	A	797	G	798	*	U	815	G	816	G	817	A	818	A	819	cWW	ntSH		tHS	tHS	cWW
22	IL_4V88_474	4V88	0.3548	Triple sheared	A6	SSU rRNA	A	1719	G	1720	A	1721	A	1722	U	1723	*	A	1678	G	1679	G	1680	A	1681	U	1682	cWW			tHS	tHS	cWW
23	IL_5TBW_106	5TBW	0.4605	Triple sheared	1	LSU rRNA	C	2849	G	2850	A	2851	C	2852	A	2853	*	U	2835	C	2836	A	2837	A	2838	G	2839	cWW	tSH		ntHS		cWW
24	IL_5J7L_056	5J7L	0.4285	Triple sheared	AA	SSU rRNA	C	1259	G	1260	A	1261	C	1262	C	1263	*	G	1272	C	1273	A	1274	A	1275	G	1276	cWW	tSH		tHS	ncBW	cWW
25	IL_4V9F_085	4V9F	0.3211	Triple sheared	0	LSU rRNA	C	2515	G	2516	A	2517	C	2518	C	2519	*	G	2501	C	2502	A	2503	A	2504	G	2505	cWW	tSH		ntHS	cBW	cWW
26	IL_5J7L_274	5J7L	0.2906	Triple sheared	DA	LSU rRNA	C	898	A	899	A	900	C	901	C	902	*	G	875	C	876	A	877	A	878	G	879	cWW	tSH		ntHS	cBW	cWW
27	IL_4WFL_001	4WFL	0.2972	Triple sheared	A	LSRP RNA	C	91	G	92	A	93	C	94	A	95	*	U	72	C	73	G	74	A	75	G	76	cWW	tSH		tHS	cBW	cWW
28	IL_5J7L_338	5J7L	0.3257	Triple sheared	DA	LSU rRNA	C	2480	G	2481	A	2482	C	2483	G	2484	*	C	2466	C	2467	A	2468	A	2469	G	2470	cWW	tSH		ntHS	cBW	cWW
29	IL_4WF9_093	4WF9	0.3371	Triple sheared	X	LSU rRNA	C	2507	G	2508	A	2509	C	2510	G	2511	*	C	2493	C	2494	A	2495	A	2496	G	2497	cWW	ntSH		tHS	cBW	cWW
30	IL_7A0S_087	7A0S	0.3926	Triple sheared	X	LSU rRNA	C	2459	G	2460	G	2461	C	2462	G	2463	*	C	2445	C	2446	G	2447	A	2448	G	2449	cWW	tSH			ncBW	cWW
31	IL_7RQB_095	7RQB	0.3867	Triple sheared	1A	LSU rRNA	C	2480	G	2481	G	2482	C	2483	G	2484	*	C	2466	C	2467	G	2468	A	2469	G	2470	cWW	tSH			cBW	cWW
32	IL_1U6B_002	1U6B	0.3547	Triple sheared	B	197-MER	G	56	A	57	A	58	A	59	C	60	*	G	84	C	85	A	86	A	87	C	88	cWW	tSH		tHS	ncWW	cWW
33	IL_7A0S_056	7A0S	0.4835	Triple sheared	X	LSU rRNA	C	1491	A	1492	A	1493	G	1494	G	1495	*	C	1529	U	1530	C	1531	A	1532	G	1533	ncWW	tSH				cWW
34	IL_4WF9_084	4WF9	0.7612	Other IL	X	LSU rRNA	A	2122	A	2123	U	2124	U	2125	C	2126	*	G	2217	G	2218	C	2219	U	2220	U	2221	cWW	ncWW		ncWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAAG*UGGAG	4
UUAAG*CGGAG	2
CAAAC*GGACG	2
CGAAG*CGGAG	2
CGACC*GCAAG	2
CGACG*CCAAG	2
CGGCG*CCGAG	2
UUAAG*UGGAG	1
UUAAC*GGGAG	1
CUAAC*GGGAG	1
UAAAC*GGGCG	1
UGAAU*AGGAA	1
CGAAC*GGGAG	1
CUAAC*GGACG	1
CGAAU*AGGAG	1
CGAAA*UGGAG	1
UGAGG*UGGAG	1
UGAAG*UGGAA	1
AGAAU*AGGAU	1
CGACA*UCAAG	1
CAACC*GCAAG	1
CGACA*UCGAG	1
GAAAC*GCAAC	1
CAAGG*CUCAG	1
AAUUC*GGCUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GGA	12
UAA*GGA	5
GAC*CAA	5
AAA*GAC	2
GGC*CGA	2
AAA*GGC	1
UAA*GAC	1
GAG*GGA	1
AAC*CAA	1
GAC*CGA	1
AAA*CAA	1
AAG*UCA	1
AUU*GCU	1

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_56467.6 Version IL_56467.6 of this group appears in releases 3.54 to 3.76 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_56467.6 Version IL_56467.6 of this group appears in releases 3.54 to 3.76

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Csv

Json