Motif IL_58849.2 Version IL_58849.2 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-5 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_045 | 1FJG | 1.3338 | 1 | A | SSU rRNA | G | 1124 | U | 1126 | G | 1127 | * | A | 1146 | C | 1145 | C | 1147 | U | 1148 | C | 1149 | cWW | ncWW | ncSW | ||
| 2 | IL_1CSL_001 | 1CSL | 0.0000 | 1 | A+B | RNA (13-mer) + RNA (15-mer) | G | 46 | G | 47 | G | 48 | * | C | 49 | G | 70 | G | 71 | A | 73 | C | 74 | cWW | cWW | cWH | cWW | |
| 3 | IL_1DUQ_001 | 1DUQ | 0.0450 | 1 | A+B | THE REV BINDING ELEMENT | G | 104 | G | 105 | G | 106 | * | C | 107 | G | 123 | G | 124 | A | 126 | C | 127 | cWW | cWW | cWH | cWW | |
| 4 | IL_1DUQ_003 | 1DUQ | 0.0477 | 1 | C+D | THE REV BINDING ELEMENT | G | 204 | G | 205 | G | 206 | * | C | 207 | G | 223 | G | 224 | A | 226 | C | 227 | cWW | cWH | cWW | ||
| 5 | IL_1DUQ_005 | 1DUQ | 0.2549 | 1 | E+F | THE REV BINDING ELEMENT | G | 304 | G | 305 | G | 306 | * | C | 307 | G | 323 | G | 324 | A | 326 | C | 327 | cWW | cWW | cWH | cWW | |
| 6 | IL_1DUQ_007 | 1DUQ | 0.2586 | 1 | G+H | THE REV BINDING ELEMENT | G | 404 | G | 405 | G | 406 | * | C | 407 | G | 423 | G | 424 | A | 426 | C | 427 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGC*GGUAC | 5 |
| GUUG*CACUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*GUA | 5 |
| UU*ACU | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_58849.2 | Only in the parent motif |
|---|---|---|---|
| IL_58849.1 Compare | IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001, IL_1FJG_045, IL_1DUQ_007 | IL_1DUQ_003 | IL_1S72_037, IL_1GID_008 |
| IL_58602.2 Compare | IL_1DUQ_003 | IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001, IL_1FJG_045, IL_1DUQ_007 | IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_1S72_078, IL_3D2V_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_58849.2 | Only in the child motif |
|---|---|---|---|
| IL_13224.1 Compare | IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001 | IL_1DUQ_003, IL_1FJG_045, IL_1DUQ_007 | |
| IL_67609.1 Compare | IL_1DUQ_003, IL_1DUQ_007 | IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001, IL_1FJG_045 | |
| IL_85805.1 Compare | IL_1FJG_045 | IL_1DUQ_001, IL_1DUQ_005, IL_1DUQ_003, IL_1CSL_001, IL_1DUQ_007 |
Coloring options: