Motif IL_58849.1 Version IL_58849.1 of this group appears in releases 0.3 to 0.3
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-5 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1GID_008 | 1GID | 0.7472 | 1 | B | P4-P6 RNA RIBOZYME DOMAIN | A | 214 | G | 215 | C | 216 | * | C | 217 | G | 103 | A | 104 | A | 105 | U | 107 | cWW | cWW | cWW | cWW | |
| 2 | IL_1DUQ_007 | 1DUQ | 0.5078 | 1 | G+H | THE REV BINDING ELEMENT | G | 404 | G | 405 | G | 406 | * | C | 407 | G | 423 | G | 424 | A | 426 | C | 427 | cWW | cWH | cWW | ||
| 3 | IL_1CSL_001 | 1CSL | 0.0000 | 1 | A+B | RNA (13-mer) + RNA (15-mer) | G | 46 | G | 47 | G | 48 | * | C | 49 | G | 70 | G | 71 | A | 73 | C | 74 | cWW | cWW | cWH | cWW | |
| 4 | IL_1DUQ_001 | 1DUQ | 0.0450 | 1 | A+B | THE REV BINDING ELEMENT | G | 104 | G | 105 | G | 106 | * | C | 107 | G | 123 | G | 124 | A | 126 | C | 127 | cWW | cWW | cWH | cWW | |
| 5 | IL_1DUQ_005 | 1DUQ | 0.0477 | 1 | E+F | THE REV BINDING ELEMENT | G | 304 | G | 305 | G | 306 | * | C | 307 | G | 323 | G | 324 | A | 326 | C | 327 | cWW | cWW | cWH | cWW | |
| 6 | IL_1FJG_045 | 1FJG | 0.2549 | 1 | A | SSU rRNA | G | 1124 | U | 1126 | G | 1127 | * | A | 1146 | C | 1145 | C | 1147 | U | 1148 | C | 1149 | cWW | ncWW | ncSW | ||
| 7 | IL_1S72_037 | 1S72 | 1.3338 | 0 | 0 | LSU rRNA | C | 1000 | U | 1001 | G | 1002 | * | U | 1003 | A | 965 | U | 966 | U | 967 | G | 968 | cWW | cwW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGC*GGUAC | 4 |
| AGCC*GAAUU | 1 |
| GUUG*CACUC | 1 |
| CUGU*AUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*GUA | 4 |
| GC*AAU | 1 |
| UU*ACU | 1 |
| UG*UU | 1 |
Release history
| Release | 0.3 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_58849.1 | Only in the parent motif |
|---|---|---|---|
| IL_70178.1 Compare | IL_1DUQ_001, IL_1CSL_001, IL_1DUQ_005, IL_1FJG_045 | IL_1S72_037, IL_1DUQ_007, IL_1GID_008 | |
| IL_14877.1 Compare | IL_1S72_037, IL_1GID_008 | IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001, IL_1FJG_045, IL_1DUQ_007 | IL_2NOK_007, IL_2NOK_004, IL_255D_001, IL_2PN4_009, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1FJG_029, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003, IL_1L9A_005 |
| IL_58602.1 Compare | IL_1DUQ_007 | IL_1CSL_001, IL_1S72_037, IL_1DUQ_001, IL_1DUQ_005, IL_1GID_008, IL_1FJG_045 | IL_3D2V_006, IL_3D2V_003, IL_1DUQ_003, IL_2GDI_008, IL_1S72_078, IL_2GDI_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_58849.1 | Only in the child motif |
|---|---|---|---|
| IL_58849.2 Compare | IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001, IL_1FJG_045, IL_1DUQ_007 | IL_1S72_037, IL_1GID_008 | IL_1DUQ_003 |
| IL_14877.3 Compare | IL_1S72_037, IL_1GID_008 | IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001, IL_1FJG_045, IL_1DUQ_007 | IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_1FJG_029, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1L9A_005, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_2NOK_007, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003 |
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