Motif IL_84950.1 Version IL_84950.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUX_087 | 4CUX | 0.8806 | 1 | 2 | 18S RRNA | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW | |
| 2 | IL_3U5F_086 | 3U5F | 0.9100 | 1 | 6 | 18S rRNA | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW | |
| 3 | IL_1KXK_003 | 1KXK | 0.8499 | 2 | Multiple bulged bases | A | ai5g group II Self-splicing intron | U | 28 | G | 29 | * | C | 42 | G | 45 | cWW | cWW |
| 4 | IL_4NVV_072 | 4NVV | 0.4714 | 2 | A | 23S Ribosomal RNA | U | 1872 | G | 1873 | * | U | 1920 | A | 1923 | cWW | cWW | |
| 5 | IL_4IOA_067 | 4IOA | 0.3719 | 2 | Multiple bulged bases | X | LSU rRNA | U | 1833 | G | 1834 | * | U | 1881 | A | 1884 | cWW | cWW |
| 6 | IL_1XOK_001 | 1XOK | 0.1318 | 2 | Major groove intercalation | A | alfalfa mosaic virus RNA 3' UTR | C | 846 | U | 847 | * | A | 864 | G | 867 | cWW | cWW |
| 7 | IL_1XOK_002 | 1XOK | 0.0000 | 2 | Major groove intercalation | A+B | alfalfa mosaic virus RNA 3' UTR | C | 868 | C | 869 | * | G | 877 | G | 880 | cWW | cWW |
| 8 | IL_387D_001 | 387D | 0.1959 | 2 | Multiple bulged bases | A | RNA Pseudoknot | U | 1 | C | 2 | * | G | 15 | A | 18 | cWW | cWW |
| 9 | IL_1U9S_008 | 1U9S | 0.3420 | 1 | Stack outside cWW | A | RIBONUCLEASE P | G | 195 | C | 196 | * | G | 217 | C | 219 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UA*UUG | 2 |
| UG*UGAA | 2 |
| UG*CACG | 1 |
| CU*AAUG | 1 |
| CC*GAUG | 1 |
| UC*GGAA | 1 |
| GC*GGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GA | 3 |
| *U | 2 |
| *AU | 2 |
| *AC | 1 |
| *G | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_84950.1 | Only in the parent motif |
|---|---|---|---|
| IL_28947.3 Compare | IL_387D_001, IL_1U9S_008, IL_1XOK_001, IL_1KXK_003, IL_4NVV_072, IL_4IOA_067, IL_1XOK_002 | IL_3U5F_086, IL_4CUX_087 | IL_2QBG_086, IL_2NZ4_007, IL_1S72_042, IL_3U5H_063, IL_4A1B_063, IL_2QBG_060, IL_4NVV_034, IL_3U5H_137, IL_4NVV_061, IL_4C7O_003, IL_1S72_022, IL_1FJG_005, IL_4NVV_107, IL_3U5H_019, IL_1S72_099, IL_2AW7_005, IL_4FAW_014 |
| IL_95908.1 Compare | IL_3U5F_086 | IL_387D_001, IL_4CUX_087, IL_1XOK_001, IL_1U9S_008, IL_1KXK_003, IL_4NVV_072, IL_4IOA_067, IL_1XOK_002 | IL_4NVV_102, IL_4IOA_099 |
Children motifs
| Child motif | Common motif instances | Only in IL_84950.1 | Only in the child motif |
|---|---|---|---|
| IL_68200.1 Compare | IL_1XOK_001, IL_387D_001, IL_1XOK_002, IL_1U9S_008 | IL_4IOA_067, IL_1KXK_003, IL_4CUX_087, IL_3U5F_086, IL_4NVV_072 | IL_4UN5_002, IL_2QBG_022, IL_2QBG_097, IL_4KZD_006, IL_3SN2_002, IL_3U5H_031, IL_4UN3_002, IL_4OO8_002, IL_4QCN_095, IL_1VWW_139, IL_3SNP_002, IL_1VW3_080, IL_4IOA_092, IL_1VWW_148 |
| IL_18916.1 Compare | IL_1KXK_003, IL_4CUX_087, IL_3U5F_086 | IL_387D_001, IL_1U9S_008, IL_1XOK_001, IL_4NVV_072, IL_4IOA_067, IL_1XOK_002 | IL_2QBG_086, IL_1S72_093, IL_4QCN_081, IL_4CUV_067 |
| IL_61513.1 Compare | IL_4IOA_067 | IL_387D_001, IL_4CUX_087, IL_1U9S_008, IL_1KXK_003, IL_4NVV_072, IL_1XOK_001, IL_1XOK_002, IL_3U5F_086 | IL_2OZB_001, IL_1VWW_013, IL_3U5H_046 |
- Annotations
-
- Multiple bulged bases (3)
- (3)
- Major groove intercalation (2)
- Stack outside cWW (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.13 | Avg 0.54 | Max 0.94
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