Motif IL_65554.2 Version IL_65554.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-3 | 2-8 | 3-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_010 | 2AW7 | 0.7322 | 0 | A | 16S ribosomal RNA | C | 132 | U | 133 | G | 134 | C | 135 | C | 136 | * | G | 227 | A | 228 | U | 229 | G | 230 | cWW | cwW | cWW | |||
| 2 | IL_1FJG_008 | 1FJG | 0.6982 | 0 | A | SSU rRNA | C | 132 | U | 133 | A | 134 | C | 135 | C | 136 | * | G | 227 | A | 228 | U | 229 | G | 230 | cWW | cwW | cWW | |||
| 3 | IL_1VW3_071 | 1VW3 | 0.5087 | 0 | A | 21S ribosomal RNA | A | 2468 | U | 2469 | A | 2470 | A | 2471 | C | 2472 | * | G | 2578 | A | 2579 | A | 2580 | U | 2581 | cWW | cSH | cWw | cWW | ||
| 4 | IL_4BPP_081 | 4BPP | 0.0966 | 0 | A | 18S RRNA | G | 1713 | U | 1714 | A | 1715 | A | 1716 | C | 1717 | * | G | 1610 | C | 1611 | C | 1612 | C | 1613 | cWW | cSH | ncWS | cWW | cWW | |
| 5 | IL_1FJG_055 | 1FJG | 0.0000 | 0 | A | SSU rRNA | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1401 | C | 1402 | C | 1403 | C | 1404 | cWW | cSH | cWS | cWW | cWW | |
| 6 | IL_2AW7_061 | 2AW7 | 0.0742 | 0 | A | 16S ribosomal RNA | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1401 | C | 1402 | C | 1403 | C | 1404 | cWW | cSH | cWS | cWW | cWW | |
| 7 | IL_3U5F_081 | 3U5F | 0.0920 | 0 | 6 | 18S rRNA | G | 1760 | U | 1761 | A | 1762 | A | 1763 | C | 1764 | * | G | 1638 | C | 1639 | C | 1640 | C | 1641 | cWW | cSH | cWS | cWW | cWW | |
| 8 | IL_4CUX_082 | 4CUX | 0.3455 | 0 | 2 | 18S RRNA | G | 1760 | U | 1761 | A | 1762 | A | 1763 | C | 1764 | * | G | 1638 | C | 1639 | C | 1640 | C | 1641 | cWW | cWS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAAC*GCCC | 5 |
| CUGCC*GAUG | 1 |
| CUACC*GAUG | 1 |
| AUAAC*GAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*CC | 5 |
| UGC*AU | 1 |
| UAC*AU | 1 |
| UAA*AA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_65554.2 | Only in the parent motif |
|---|---|---|---|
| IL_65554.1 Compare | IL_4BPP_081, IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_1VW3_071, IL_1FJG_008, IL_1FJG_055 | IL_4CUX_082 | IL_3CUN_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_65554.2 | Only in the child motif |
|---|---|---|---|
| IL_19986.1 Compare | IL_4CUX_082, IL_4BPP_081, IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_1VW3_071, IL_1FJG_008, IL_1FJG_055 | IL_3LOA_001, IL_1VX2_073, IL_1VX6_136, IL_3J7A_071, IL_2O3V_002, IL_3BNT_005, IL_3BNT_002 |
- Annotations
-
- (8)
- Basepair signature
- cWW-cWW-cSH-cWS-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.42 | Max 0.78
Coloring options: