Motif IL_66688.1 Version IL_66688.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3O58_014 | 3O58 | 0.3588 | 1 | 1 | A | 204 | C | 205 | * | G | 189 | U | 191 | cWW | cWW | |
| 2 | IL_1S72_045 | 1S72 | 0.0000 | 2 | Bulged stacked bases (H) | 0 | G | 1269 | U | 1270 | * | A | 1286 | C | 1289 | cWW | cWW |
| 3 | IL_2XZM_033 | 2XZM | 0.4028 | 5 | A | U | 1076 | C | 1077 | * | G | 610 | A | 616 | cWW | cWW | |
| 4 | IL_2AW7_029 | 2AW7 | 0.7127 | 5 | A | C | 880 | G | 881 | * | C | 569 | G | 575 | cWW | cWW | |
| 5 | IL_1FJG_022 | 1FJG | 0.7402 | 5 | A | C | 880 | G | 881 | * | C | 569 | G | 575 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*CGUAAAG | 2 |
| AC*GUU | 1 |
| GU*AAUC | 1 |
| UC*GUUAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GUAAA | 2 |
| *U | 1 |
| *AU | 1 |
| *UUAAA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_66688.1 | Only in the parent motif |
|---|---|---|---|
| IL_96481.1 Compare | IL_1S72_045 | IL_2AW7_029, IL_2XZM_033, IL_1FJG_022, IL_3O58_014 | IL_2PN4_008, IL_1GID_009, IL_1I9X_002, IL_2PN4_003, IL_2ZJR_031, IL_1FJG_001, IL_1FJG_040, IL_1S72_088, IL_2C50_002, IL_1GID_005, IL_2C50_001, IL_3D2V_004, IL_3D2V_001, IL_2PLY_002, IL_2PLY_001, IL_3MEI_001, IL_2GIS_001, IL_2VPL_002, IL_2BU1_001, IL_1DQH_001, IL_1S03_006, IL_1KXK_001, IL_1FJG_036, IL_1JZV_002, IL_1JZV_005, IL_2C4Z_002, IL_1ET4_008, IL_1S72_077, IL_1ET4_004, IL_3F1H_098, IL_1ET4_002, IL_1GID_002, IL_3F1H_034, IL_1S03_002, IL_1S72_104, IL_2ZJR_093, IL_1F7Y_002, IL_2ZY6_002 |
| IL_67328.1 Compare | IL_1FJG_022 | IL_1S72_045, IL_2XZM_033, IL_2AW7_029, IL_3O58_014 |
Children motifs
| Child motif | Common motif instances | Only in IL_66688.1 | Only in the child motif |
|---|---|---|---|
| IL_32390.1 Compare | IL_1S72_045, IL_2XZM_033, IL_1FJG_022, IL_2AW7_029 | IL_3O58_014 | IL_2QBG_086, IL_2NZ4_007, IL_2NZ4_004, IL_3U5F_033, IL_3G78_015, IL_1S72_042, IL_3U5H_063, IL_4A1B_063, IL_3UXR_107, IL_1KXK_003, IL_3U5H_137, IL_1S72_022, IL_2ZJR_024, IL_1FJG_005, IL_3U5H_019, IL_2AW7_005, IL_1S72_099, IL_2QBG_060 |
- Annotations
-
- (4)
- Bulged stacked bases (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.10 | Avg 0.43 | Max 0.88
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