#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_3UXR_1073UXR0.49971 B5S ribosomal RNAC65G67*C17G18cWWcWW
2 IL_2AW7_0052AW70.53442 A16S ribosomal RNAC63A66*U103G104cWWcWW
3 IL_2NZ4_0072NZ40.56591 G+Rsubstrate strand RNA 13-mer + GlmS ribozymeC5G7*C52G53cWWcWW
4 IL_3U5F_0333U5F0.31575 618S rRNAG616A622*U1104C1105cWWcWW
5 IL_1FJG_0221FJG0.00005 A SSU rRNAC569G575*C880G881cWWcWW
6 IL_3G78_0153G780.10212 AGroup II catalytic intron D1-D4-1U375G378*U365A366cWWcWW
7 IL_1KXK_0031KXK0.30572Multiple bulged basesAai5g group II Self-splicing intronC42G45*U28G29cWWcWW
8 IL_1S72_0991S720.43371 9 5S rRNAC64G66*C15G16cWWcWW
9 IL_2XZM_0332XZM0.34205 A18S RRNAG610A616*U1076C1077cWWcWW
10 IL_2NZ4_0042NZ40.47321 F+Qsubstrate strand RNA 13-mer + GlmS ribozymeC5G7*C52G53cWWcWW
11 IL_3U5H_1373U5H0.40261 525S rRNAU3381G3383*C3324G3325cWWcWW
12 IL_1S72_0421S720.40421 0 LSU rRNAU1136G1138*C1225G1226cWWcWW
13 IL_2ZJR_0242ZJR0.38551 X LSU rRNAG938G940*C863C864cWWcWW
14 IL_2AW7_0292AW70.34815 A16S ribosomal RNAC569G575*C880G881cWWcWW
15 IL_1S72_0451S720.37192 0 LSU rRNAA1286C1289*G1269U1270cWWcWW
16 IL_1FJG_0051FJG0.41342 A SSU rRNAC63G66*C103G104cWWcWW
17 IL_2QBG_0602QBG0.45521 B23S rRNAC1489G1491*C1499G1500cWWcWW
18 IL_1S72_0221S720.49142 0 LSU rRNAC699G702*C726G727cWWcWW
19 IL_3U5H_0193U5H0.34781 525S rRNAC577G579*U512G513cWWcWW
20 IL_3U5H_0633U5H0.39761 525S rRNAC1385G1387*C1420G1421cWWcWW
21 IL_4A1B_0634A1B0.65271 126S RRNAU1424G1426*U1437A1438cWWcWW
22 IL_2QBG_0862QBG0.74021 B23S rRNAU2202G2204*U2220G2221cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CG5
GUUAAAA*UC2
CGUAAAG*CG2
CG*CAG1
CGAA*UG1
UACG*UA1
CACG*UG1
UUG*CG1
UGG*CG1
GCG*CC1
AAUC*GU1
CGUG*CG1
CAUG*CG1
CAG*UG1
UUG*UA1
UUG*UG1
Non-Watson-Crick part of the motif
SequenceCounts
A*6
U*3
UUAAA*2
GUAAA*2
AC*2
AU*2
*A1
GA*1
G*1
C*1
GU*1

Release history

Release0.6
Date2012-04-02
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_32390.1Only in the parent motif
IL_61133.1
Compare
IL_2NZ4_007, IL_1S72_042, IL_2QBG_060, IL_1S72_022, IL_1KXK_003, IL_1FJG_005, IL_3G78_015, IL_2AW7_005, IL_1S72_099IL_2QBG_086, IL_1S72_045, IL_2XZM_033, IL_2ZJR_024, IL_3U5H_063, IL_3UXR_107, IL_3U5F_033, IL_1FJG_022, IL_2NZ4_004, IL_4A1B_063, IL_2AW7_029, IL_3U5H_019, IL_3U5H_137IL_2PN4_008, IL_1ET4_008, IL_2ZJR_011, IL_2PN4_003, IL_2ZJR_016, IL_2ZJR_015, IL_2AW7_051, IL_1XOK_001, IL_3O58_066, IL_1XOK_002, IL_1U9S_008, IL_1ET4_010, IL_3O58_142, IL_2C50_002, IL_3O30_068, IL_3O58_068, IL_2XZM_030, IL_3D2V_004, IL_3D2V_001, IL_1S72_040, IL_2QUX_001, IL_3O30_026, IL_1GID_002, IL_2ZJR_068, IL_2XXA_003, IL_2ZJR_065, IL_2XXA_005, IL_2IPY_002, IL_1CSL_002, IL_2QBG_099, IL_2ZJR_002, IL_3O30_071, IL_3O58_074, IL_3O58_076, IL_2AW7_017, IL_1GID_009, IL_1ET4_006, IL_1GID_005, IL_1ET4_002, IL_2AW7_026, IL_3O30_065, IL_3PYO_037, IL_1S72_014, IL_2XZM_009, IL_2ZJR_093, IL_3B31_001, IL_2XXA_010, IL_2XXA_012, IL_1S72_086, IL_2NOK_006, IL_387D_001, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_2ZJR_034, IL_1DUQ_006, IL_2ZJR_031, IL_2QBG_089, IL_3O58_160, IL_3IVK_003, IL_1FJG_040, IL_2QBG_007, IL_1FJG_043, IL_1S72_064, IL_1GID_012, IL_1S72_088, IL_2PLY_002, IL_1S72_104, IL_1U9S_006, IL_6MSF_001, IL_1U9S_003, IL_1U9S_001, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_3PYO_034, IL_2C50_001, IL_3PYO_032, IL_2OIU_003, IL_2OIU_001, IL_3O58_057, IL_3PYO_095, IL_3O30_010, IL_3O58_051, IL_3O58_112, IL_2C4Z_001, IL_2XZM_068, IL_2PJP_001, IL_1S72_074, IL_2AW7_001, IL_2AW7_002, IL_2C4Z_002, IL_2QBG_073, IL_2QBG_023, IL_3OWZ_005, IL_3PYO_002, IL_3OWZ_001, IL_1S72_002, IL_3PYO_008, IL_2AW7_008, IL_2BQ5_002, IL_2ZJR_056, IL_3PYO_061, IL_2BQ5_001, IL_3O30_024, IL_3PYO_064, IL_2BU1_002, IL_2BU1_001, IL_1DUQ_002, IL_3O58_100, IL_1DUQ_004, IL_3G78_004, IL_2XZM_074, IL_1DUQ_008, IL_2AW7_019, IL_2XZM_065, IL_2QBG_107, IL_2QBG_069, IL_2QBG_104, IL_2GIS_001, IL_3D0U_005, IL_3D0U_001, IL_2IZN_002, IL_2IZN_001, IL_3IVK_001, IL_3PYO_018, IL_2A64_002, IL_2IZM_001, IL_2IZM_002, IL_1U63_004, IL_1MFQ_005, IL_1U63_002, IL_3PYO_078, IL_1X8W_001, IL_3O58_133, IL_1FUF_002, IL_3O58_137, IL_1FJG_016, IL_1FJG_014, IL_1S72_096, IL_3DIR_001, IL_3O58_046, IL_3DIR_005, IL_1S03_002, IL_1S03_001, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3MUR_003, IL_1NBS_005, IL_1R3E_001, IL_3MUR_004, IL_1R3E_002, IL_2A64_003, IL_3PYO_019, IL_2IZ9_001, IL_2IZ9_002, IL_2ZY6_002, IL_3PYO_044, IL_3O58_087, IL_2QBG_070, IL_1ET4_004, IL_3PYO_072, IL_3O58_121, IL_2XZM_056, IL_2XZM_057, IL_1FJG_007, IL_1S72_030, IL_1FJG_001, IL_1FJG_002, IL_2XZM_013, IL_1S72_077, IL_3MEI_001, IL_3PYO_088, IL_2VPL_005, IL_1S72_027, IL_1S72_026, IL_2VPL_002, IL_3P49_003, IL_1S72_067, IL_2XZM_021, IL_2AW7_048, IL_1DQH_001, IL_3O30_022, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_1FJG_036, IL_2QUX_004, IL_2QUX_005, IL_2QUX_006, IL_1JZV_002, IL_1JZV_005, IL_3O58_017, IL_2QUX_002, IL_2QUX_003, IL_2IPY_005, IL_2XZM_023, IL_2QBG_035, IL_1FUF_003, IL_2PLY_001, IL_2XZM_024, IL_2XZM_029, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_3DHS_002, IL_3DHS_003, IL_2ZJR_076
IL_66688.1
Compare
IL_1S72_045, IL_2XZM_033, IL_1FJG_022, IL_2AW7_029IL_2QBG_086, IL_2NZ4_007, IL_2NZ4_004, IL_3U5F_033, IL_3G78_015, IL_1S72_042, IL_3U5H_063, IL_4A1B_063, IL_3UXR_107, IL_1KXK_003, IL_3U5H_137, IL_1S72_022, IL_2ZJR_024, IL_1FJG_005, IL_3U5H_019, IL_2AW7_005, IL_1S72_099, IL_2QBG_060IL_3O58_014
IL_97493.1
Compare
IL_2QBG_086, IL_2NZ4_004IL_3U5H_137, IL_2NZ4_007, IL_1S72_045, IL_2XZM_033, IL_3G78_015, IL_1S72_042, IL_3U5H_063, IL_4A1B_063, IL_3UXR_107, IL_1KXK_003, IL_1FJG_022, IL_3U5F_033, IL_1S72_022, IL_2ZJR_024, IL_1FJG_005, IL_2AW7_029, IL_3U5H_019, IL_2AW7_005, IL_1S72_099, IL_2QBG_060IL_2QBG_037, IL_2OZB_001, IL_2XZM_028, IL_1FJG_020, IL_3O58_065, IL_3O30_066, IL_2ZJR_033, IL_2AW7_027, IL_3PYO_057
IL_28693.1
Compare
IL_2ZJR_024IL_2QBG_086, IL_2NZ4_007, IL_1S72_045, IL_2XZM_033, IL_3G78_015, IL_1S72_042, IL_3U5H_063, IL_4A1B_063, IL_3UXR_107, IL_3U5H_137, IL_3U5F_033, IL_1FJG_022, IL_2NZ4_004, IL_1S72_022, IL_1KXK_003, IL_1FJG_005, IL_2AW7_029, IL_3U5H_019, IL_2AW7_005, IL_1S72_099, IL_2QBG_060IL_2IPY_001, IL_2QBG_032, IL_2IPY_004, IL_1KXK_001, IL_3O58_104, IL_3IWN_001

Children motifs

Child motifCommon motif instancesOnly in IL_32390.1Only in the child motif
IL_32390.2
Compare
IL_2QBG_086, IL_2NZ4_007, IL_2XZM_033, IL_1S72_042, IL_2ZJR_024, IL_1FJG_005, IL_2QBG_060, IL_3U5F_033, IL_1FJG_022, IL_1S72_022, IL_4A1B_063, IL_2AW7_029, IL_3U5H_019, IL_3U5H_137, IL_1S72_099, IL_2AW7_005IL_1S72_045, IL_3U5H_063, IL_3UXR_107, IL_2NZ4_004, IL_1KXK_003, IL_3G78_015IL_2OZB_001, IL_2XZM_066, IL_3V2F_107, IL_3U5H_046, IL_3V2F_059
IL_89088.1
Compare
IL_1KXK_003, IL_1S72_045, IL_3U5H_063IL_2QBG_086, IL_2NZ4_007, IL_2NZ4_004, IL_2XZM_033, IL_1S72_042, IL_2ZJR_024, IL_4A1B_063, IL_3UXR_107, IL_3U5H_137, IL_3U5F_033, IL_1FJG_022, IL_1S72_022, IL_1FJG_005, IL_2AW7_029, IL_3G78_015, IL_3U5H_019, IL_2AW7_005, IL_1S72_099, IL_2QBG_060IL_1KXK_001, IL_4A1B_032, IL_2QBG_032
IL_06429.1
Compare
IL_3G78_015IL_2QBG_086, IL_2NZ4_007, IL_1S72_045, IL_2XZM_033, IL_1S72_042, IL_3U5H_063, IL_4A1B_063, IL_3UXR_107, IL_3U5H_137, IL_1KXK_003, IL_1FJG_022, IL_2NZ4_004, IL_3U5F_033, IL_1S72_022, IL_2ZJR_024, IL_1FJG_005, IL_2AW7_029, IL_3U5H_019, IL_2AW7_005, IL_1S72_099, IL_2QBG_060IL_387D_001, IL_3V2F_095, IL_2QBG_097, IL_3SN2_002, IL_2QBG_022, IL_1U9S_008, IL_1XOK_001, IL_4A1B_113, IL_2ZJR_091, IL_1XOK_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_3V2F_008
Annotations
  • Multiple bulged bases (1)
  • Basepair signature
    04_cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.50 | Max 0.99
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