Motif IL_71110.2 Version IL_71110.2 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4KZD_004 | 4KZD | 0.3730 | 3 | Tandem non-canonical cWW pairs | R | RNA (84-MER) | G | 19 | A | 20 | A | 21 | C | 25 | * | G | 63 | A | 64 | G | 65 | C | 66 | cWW | cWW | cWW | |
2 | IL_4TS2_005 | 4TS2 | 0.3335 | 3 | Tandem non-canonical cWW pairs | X+Y | Spinach aptamer RNA, bimolecular construct | G | 22 | A | 23 | A | 24 | C | 28 | * | G | 74 | A | 75 | G | 76 | C | 77 | cWW | cWW | ncwW | cWW |
3 | IL_7L0Z_002 | 7L0Z | 0.2991 | 3 | G | RNA (69-MER) | G | 12 | A | 13 | G | 14 | C | 18 | * | G | 55 | G | 56 | G | 57 | C | 58 | cWW | cWW | ncWB | cWW | |
4 | IL_1KUQ_003 | 1KUQ | 0.3333 | 1 | Tandem non-canonical cWW pairs | B | 16S RIBOSOMAL RNA FRAGMENT | G | 26 | A | 27||A | G | 28||A | G | 30 | * | U | 39 | G | 40 | G | 41 | U | 42 | cWW | ncWW | cwW | cWW |
5 | IL_1G1X_003 | 1G1X | 0.0727 | 1 | Tandem non-canonical cWW pairs | D+E | 16S RIBOSOMAL RNA | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
6 | IL_1G1X_006 | 1G1X | 0.0772 | 1 | Tandem non-canonical cWW pairs | I+J | 16S RIBOSOMAL RNA | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
7 | IL_4LFB_029 | 4LFB | 0.0000 | 1 | Tandem non-canonical cWW pairs | A | SSU rRNA | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
8 | IL_5J7L_033 | 5J7L | 0.1281 | 1 | Tandem non-canonical cWW pairs | AA | SSU rRNA | U | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | A | 743 | cWW | cWW | cwW | cWW |
9 | IL_6CZR_141 | 6CZR | 0.1493 | 1 | Tandem non-canonical cWW pairs | 1a | SSU rRNA | G | 646 | A | 647 | G | 648 | G | 650 | * | U | 724 | G | 725 | G | 726 | U | 727 | cWW | ncWW | cwW | cWW |
10 | IL_1CSL_001 | 1CSL | 0.4767 | 1 | A+B | RNA (13-mer) + RNA (15-mer) | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | cWW | cWH | cWW | |
11 | IL_1DUQ_001 | 1DUQ | 0.4724 | 1 | A+B | THE REV BINDING ELEMENT | G | 104 | G | 105 | G | 106 | C | 107 | * | G | 123 | G | 124 | A | 126 | C | 127 | cWW | cWW | cWH | cWW | |
12 | IL_7WIE_001 | 7WIE | 0.3492 | 0 | V | RNA (50-MER) | G | 49 | A | 50 | G | 51 | A | 52 | * | U | 10 | G | 11 | G | 12 | U | 13 | cWW | cWW | cWH | cWW | |
13 | IL_8C3A_403 | 8C3A | 0.4132 | 0 | CM | SSU rRNA | C | 147 | C | 148 | G | 149 | U | 150 | * | A | 160 | G | 161 | A | 162 | G | 163 | cWW | ncWW | cWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAGAG*UGGU | 5 |
GAAGGAC*GAGC | 2 |
GGGC*GGUAC | 2 |
GAGGGUC*GGGC | 1 |
UAGAG*UGGA | 1 |
GAGA*UGGU | 1 |
CCGU*AGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AGA*GG | 6 |
AAGGA*AG | 2 |
GG*GUA | 2 |
AGGGU*GG | 1 |
AG*GG | 1 |
CG*GA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (8)
- (5)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.35 | Max 0.67
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