#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_4KZD_0044KZD0.37303Tandem non-canonical cWW pairsRRNA (84-MER)G19A20A21C25*G63A64G65C66cWWcWWcWW
2 IL_4TS2_0054TS20.33353Tandem non-canonical cWW pairsX+YSpinach aptamer RNA, bimolecular constructG22A23A24C28*G74A75G76C77cWWcWWncwWcWW
3 IL_7L0Z_0027L0Z0.29913GRNA (69-MER)G12A13G14C18*G55G56G57C58cWWcWWncWBcWW
4 IL_1KUQ_0031KUQ0.33331Tandem non-canonical cWW pairsB16S RIBOSOMAL RNA FRAGMENTG26A27||AG28||AG30*U39G40G41U42cWWncWWcwWcWW
5 IL_1G1X_0031G1X0.07271Tandem non-canonical cWW pairsD+E16S RIBOSOMAL RNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
6 IL_1G1X_0061G1X0.07721Tandem non-canonical cWW pairsI+J16S RIBOSOMAL RNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
7 IL_4LFB_0294LFB0.00001Tandem non-canonical cWW pairsA SSU rRNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
8 IL_5J7L_0335J7L0.12811Tandem non-canonical cWW pairsAA SSU rRNAU662A663G664G666*U740G741G742A743cWWcWWcwWcWW
9 IL_6CZR_1416CZR0.14931Tandem non-canonical cWW pairs1a SSU rRNAG646A647G648G650*U724G725G726U727cWWncWWcwWcWW
10 IL_1CSL_0011CSL0.47671A+BRNA (13-mer) + RNA (15-mer)G46G47G48C49*G70G71A73C74cWWcWWcWHcWW
11 IL_1DUQ_0011DUQ0.47241A+BTHE REV BINDING ELEMENTG104G105G106C107*G123G124A126C127cWWcWWcWHcWW
12 IL_7WIE_0017WIE0.34920VRNA (50-MER)G49A50G51A52*U10G11G12U13cWWcWWcWHcWW
13 IL_8C3A_4038C3A0.41320CM SSU rRNAC147C148G149U150*A160G161A162G163cWWncWWcWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGAG*UGGU5
GAAGGAC*GAGC2
GGGC*GGUAC2
GAGGGUC*GGGC1
UAGAG*UGGA1
GAGA*UGGU1
CCGU*AGAG1
Non-Watson-Crick part of the motif
SequenceCounts
AGA*GG6
AAGGA*AG2
GG*GUA2
AGGGU*GG1
AG*GG1
CG*GA1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (8)
  • (5)
  • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.35 | Max 0.67
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