Motif IL_75892.2 Version IL_75892.2 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-4 | 2-6 | 3-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_049 | 4IOA | 0.3896 | 1 | C-loop | X | LSU rRNA | G | 1332 | G | 1333 | A | 1334 | A | 1335 | G | 1336 | * | C | 1344 | C | 1346 | cWW | cWS | cWW | ||||
| 2 | IL_5J7L_272 | 5J7L | 0.2381 | 2 | C-loop | DA | LSU rRNA | G | 864 | C | 865 | A | 866 | C | 867 | U | 868 | * | A | 909 | C | 912 | cWW | cSH | tWH | cWS | cWW | ||
| 3 | IL_4V9F_051 | 4V9F | 0.2572 | 1 | C-loop | 0 | LSU rRNA | G | 1425 | C | 1426 | A | 1427 | C | 1428 | U | 1429 | * | A | 1437 | C | 1439 | cWW | cSH | tWH | cWS | cWW | ||
| 4 | IL_4Y4O_227 | 4Y4O | 0.2561 | 1 | C-loop | 2A | LSU rRNA | G | 1319 | C | 1320 | A | 1321 | A | 1322 | U | 1323 | * | A | 1331 | C | 1333 | cWW | tWH | cWS | cWW | |||
| 5 | IL_4V9F_093 | 4V9F | 0.2285 | 1 | C-loop | 0 | LSU rRNA | C | 2717 | C | 2718 | A | 2719 | C | 2720 | U | 2721 | * | A | 2761 | G | 2763 | cWW | cSH | tWH | cWS | cWW | ||
| 6 | IL_4Y4O_279 | 4Y4O | 0.1369 | 1 | C-loop | 2A | LSU rRNA | C | 2680 | C | 2681 | U | 2682 | C | 2683 | U | 2684 | * | A | 2725 | G | 2727 | cWW | cSH | tWH | tHS | cWS | cWW | |
| 7 | IL_5B2P_003 | 5B2P | 0.1507 | 1 | C-loop | B | Guide RNA | C | 76 | C | 77 | U | 78 | C | 79 | U | 80 | * | A | 88 | G | 90 | cWW | cSH | tWH | tHS | cWS | cWW | |
| 8 | IL_4IOA_097 | 4IOA | 0.1247 | 1 | C-loop | X | LSU rRNA | C | 2659 | C | 2660 | G | 2661 | C | 2662 | U | 2663 | * | A | 2705 | G | 2707 | cWW | cSH | tWH | cWS | cWW | ||
| 9 | IL_5J7L_347 | 5J7L | 0.0000 | 1 | C-loop | DA | LSU rRNA | U | 2680 | C | 2681 | A | 2682 | C | 2683 | U | 2684 | * | A | 2725 | A | 2727 | ncSH | cWW | cSH | tWH | cWS | cWW | |
| 10 | IL_4JRC_003 | 4JRC | 0.1424 | 1 | C-loop | B | Distal Stem I region of the glyQS T box leader RNA | C | 29 | C | 30 | U | 31 | C | 32 | U | 33 | * | A | 73 | G | 75 | cWW | cSH | tWH | tHS | cWS | cWW | |
| 11 | IL_4WF9_101 | 4WF9 | 0.1269 | 1 | C-loop | X | LSU rRNA | C | 2707 | C | 2708 | U | 2709 | C | 2710 | U | 2711 | * | A | 2752 | G | 2754 | cWW | ncSH | tWH | ntHS | cWS | cWW | |
| 12 | IL_4MGN_001 | 4MGN | 0.1486 | 1 | C-loop | A | glyQS T box riboswitch | C | 29 | C | 30 | U | 31 | C | 32 | U | 33 | * | A | 73 | G | 75 | cWW | ncSH | ntWH | ntHS | cWS | cWW | |
| 13 | IL_1KOG_007 | 1KOG | 0.1431 | 1 | C-loop | O | Threonyl-tRNA synthetase mRNA | C | 96 | C | 97 | A | 98 | C | 99 | U | 100 | * | A | 74 | G | 76 | ncSH | cWW | cSH | tWH | cWS | cWW | |
| 14 | IL_1KOG_009 | 1KOG | 0.1431 | 1 | C-loop | O | Threonyl-tRNA synthetase mRNA | C | 96||||2_555 | C | 97||||2_555 | A | 98||||2_555 | C | 99||||2_555 | U | 100||||2_555 | * | A | 74||||2_555 | G | 76||||2_555 | ncSH | cWW | cSH | tWH | cWS | cWW | |
| 15 | IL_4V88_443 | 4V88 | 0.1602 | 2 | C-loop | A6 | SSU rRNA | U | 1617 | C | 1618 | C | 1619 | C | 1620 | U | 1621 | * | A | 1157 | A | 1160 | ncSH | cWW | ncSH | tWH | cWS | cWW | |
| 16 | IL_4WF9_033 | 4WF9 | 0.3350 | 2 | C-loop | X | LSU rRNA | G | 909 | C | 910 | A | 911 | C | 912 | U | 913 | * | A | 954 | C | 957 | tSW | cWW | cSH | tWH | cWS | cWW | |
| 17 | IL_4Y4O_206 | 4Y4O | 0.3133 | 2 | C-loop | 2A | LSU rRNA | G | 864 | C | 865 | A | 866 | C | 867 | U | 868 | * | A | 909 | C | 912 | tSW | cWW | cSH | tWH | cWS | cWW | |
| 18 | IL_4IOA_028 | 4IOA | 0.3207 | 2 | C-loop | X | LSU rRNA | G | 877 | C | 878 | A | 879 | C | 880 | U | 881 | * | A | 921 | C | 924 | tSW | cWW | cSH | tWH | cWS | cWW | |
| 19 | IL_5TBW_040 | 5TBW | 0.4047 | 3 | C-loop | 1 | LSU rRNA | G | 999 | C | 1000 | A | 1002 | A | 1003 | U | 1004 | * | A | 1046 | C | 1049 | cWW | tWH | cWS | cWW | |||
| 20 | IL_4LFB_015 | 4LFB | 0.3462 | 0 | C-loop | A | SSU rRNA | G | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | C | 390 | cWW | ntWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCACU*AAAC | 4 |
| CCUCU*ACG | 3 |
| CCUCU*AUG | 2 |
| CCACU*AUG | 2 |
| GGAAG*CGC | 1 |
| GCACU*AGC | 1 |
| GCAAU*AGC | 1 |
| CCACU*ACG | 1 |
| CCGCU*AUG | 1 |
| UCACU*AAA | 1 |
| UCCCU*ACCA | 1 |
| GCGAAU*AAAC | 1 |
| GCAAU*AC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAC*AA | 4 |
| CUC*C | 3 |
| CUC*U | 2 |
| CAC*U | 2 |
| GAA*G | 1 |
| CAC*G | 1 |
| CAA*G | 1 |
| CAC*C | 1 |
| CGC*U | 1 |
| CAC*A | 1 |
| CCC*CC | 1 |
| CGAA*AA | 1 |
| CAA* | 1 |
- Annotations
-
- C-loop (20)
- Basepair signature
- cWW-tWH-cSH-L-cWS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.28 | Max 0.54
Coloring options: