Motif IL_76308.2 Version IL_76308.2 of this group appears in releases 3.44 to 3.46
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1D4R_002 | 1D4R | 0.8953 | 0 | Other IL | A+B | 29-MER OF MODIFIED SRP RNA HELIX 6 | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | * | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | cWW | cBW | cWB | cWW | |||
| 2 | IL_4EYA_005 | 4EYA | 0.8250 | 0 | Tandem non-canonical cWW pairs with near WC pairs | g+h | RNA (12-mer) | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | * | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | ncSW | ncWW | ncWw | ncWW | cWW | ||
| 3 | IL_6ZDP_002 | 6ZDP | 0.6109 | 1 | Tandem non-canonical cWW pairs with near WC pairs | B | Chains: B | G | 1313 | U | 1314 | U | 1315 | G | 1317 | U | 1318 | C | 1321 | * | G | 1297 | A | 1298 | C | 1299 | U | 1300 | U | 1301 | C | 1302 | cWW | ncwW | ncWW | cWW | |||
| 4 | IL_1L9A_008 | 1L9A | 0.4420 | 0 | tSH-tHW-tHS-cWW | B | signal recognition particle RNA S domain | C | 190 | C | 191 | A | 192 | G | 193 | G | 194 | U | 195 | * | G | 204 | A | 205 | G | 206 | C | 207 | A | 208 | G | 209 | cWW | ncWW | tHW | cBW | cWW | cWW | |
| 5 | IL_6DVK_004 | 6DVK | 0.2783 | 0 | tSH-tHW-tHS-cWW | H | RNA (95-MER) | C | 52 | U | 53 | A | 54 | C | 55 | C | 56 | C | 57 | * | G | 38 | A | 39 | A | 40 | C | 41 | A | 42 | G | 43 | cWW | tSH | tHW | ncBW | cWW | ||
| 6 | IL_1LNT_002 | 1LNT | 0.1596 | 0 | tSH-tHW-tHS-cWW | A+B | RNA (12-mer) | U | 4 | C | 5 | A | 6 | G | 7 | G | 8 | U | 9 | * | A | 16 | A | 17 | G | 18 | C | 19 | A | 20 | G | 21 | cWW | tSH | tHW | tHS | cWW | cWW | |
| 7 | IL_3LQX_002 | 3LQX | 0.1808 | 0 | tSH-tHW-tHS-cWW | B | SRP RNA | U | 146 | C | 147 | A | 148 | G | 149 | G | 150 | U | 151 | * | A | 160 | A | 161 | G | 162 | C | 163 | A | 164 | G | 165 | cWW | tSH | tHW | tHS | cWW | cWW | |
| 8 | IL_1MFQ_007 | 1MFQ | 0.0000 | 0 | tSH-tHW-tHS-cWW | A | SRP RNA | C | 190 | C | 191 | A | 192 | G | 193 | G | 194 | U | 195 | * | G | 204 | A | 205 | G | 206 | C | 207 | A | 208 | G | 209 | cWW | tWH | ntSH | tHW | tHS | cWW | cWW |
| 9 | IL_5M73_009 | 5M73 | 0.1693 | 0 | tSH-tHW-tHS-cWW (H) | A | SRP RNA | C | 190 | C | 191 | A | 192 | G | 193 | G | 194 | U | 195 | * | G | 204 | A | 205 | G | 206 | C | 207 | A | 208 | G | 209 | cWW | ntWH | ntSH | tHW | ntHS | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAGGU*GAGCAG | 3 |
| UCAGGU*AAGCAG | 2 |
| GGGAGC*GGGAGC | 1 |
| CCUUGG*CCUUGG | 1 |
| GUUUGUC*GACUUC | 1 |
| CUACCC*GAACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAGG*AGCA | 5 |
| GGAG*GGAG | 1 |
| CUUG*CUUG | 1 |
| UUUGU*ACUU | 1 |
| UACC*AACA | 1 |
- Annotations
-
- tSH-tHW-tHS-cWW (5)
- Tandem non-canonical cWW pairs with near WC pairs (2)
- Other IL (1)
- tSH-tHW-tHS-cWW (H) (1)
- Basepair signature
- cWW-tSH-tWH-tHW-tHS-cWW-cWW
- Heat map statistics
- Min 0.14 | Avg 0.50 | Max 0.96
Coloring options: