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Motif IL_80007.11 Version IL_80007.11 of this group appears in releases 3.37 to 3.45

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_5TBW_0585TBW0.53191Single bulged A1 LSU rRNAC1420G1421*C1385G1387cWWcWW
2 IL_5J7L_0495J7L0.29411Single bulged AAA SSU rRNAU1060G1061*C1195A1197cWWcWW
3 IL_1MFQ_0051MFQ0.41431Single bulged AA SRP RNAG175G177*C220C221cWWcWW
4 IL_4R4V_0034R4V0.35041Single bulged AAVS ribozyme RNAC651G653*C766G767cWWcWW
5 IL_4R4V_0094R4V0.35041Single bulged AAVS ribozyme RNAC651||||7_556G653||||7_556*C766||||7_556G767||||7_556cWWcWW
6 IL_3MJA_0013MJA0.30311Single bulged ABDomain 3 of the cricket paralysis virus intergenic region IRES RNAC6194G6195*C6181G6183cWWcWW
7 IL_5TBW_0245TBW0.31621Single bulged A1 LSU rRNAC752C753*G779G781cWWcWW
8 IL_4LGT_0024LGT0.29961Single bulged AEstem-loop of 23S rRNAC2591G2592*C2601G2603cWWcWW
9 IL_6MSF_0036MSF0.31101Single bulged ARRNA (14-mer)G12||||P_PG13||||P_P*C2||||P_PC4||||P_P
10 IL_6MSF_0016MSF0.31101Single bulged ARRNA (14-mer)G12||||P_1G13||||P_1*C2||||P_1C4||||P_1cWWcWW
11 IL_5M73_0075M730.38521Single bulged AA SRP RNAC220C221*G175G177cWWncWW
12 IL_6D3P_0046D3P0.27611Single bulged AARNA (45-MER)C12C13*G27G29cWWcWW
13 IL_6D3P_0026D3P0.27611Single bulged AARNA (45-MER)C12||||12_566C13||||12_566*G27||||12_566G29||||12_566cWWcWW
14 IL_2C4Q_0052C4Q0.27271Single bulged ARRNA (19-mer)C14||||P_PC15||||P_P*G5||||P_PG7||||P_P
15 IL_2C4Q_0012C4Q0.27271Single bulged ARRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
16 IL_5TBW_3725TBW0.26011Single bulged AAS 5S rRNAC15U16*A63G65cWWcWW
17 IL_4P3U_0084P3U0.23431Single bulged AC+DRNA (23-mer)C7U8*A40G42cWWcWW
18 IL_4P3U_0054P3U0.21951Single bulged AB+ARNA (23-mer)C30U31*A17G19cWWcWW
19 IL_6WPI_0016WPI0.16311Single bulged ABRNA (47-MER)G11A13*U41C42cWWcWW
20 IL_4P3U_0114P3U0.16421Single bulged AC+DRNA (23-mer)A17G19*C30U31cWWcWW
21 IL_1I9X_0021I9X0.17881Single bulged AB+ARNA (13-mer)U4A6*U9A10cWWcWW
22 IL_1I9X_0011I9X0.17541Single bulged AA+BRNA (13-mer)U4A6*U9A10cWWcWW
23 IL_5AOX_0025AOX0.00001Single bulged ACALU JO CONSENSUS RNAG56G58*C108C109cWWcWW
24 IL_4AOB_0064AOB0.13931Single bulged AA SAM-I riboswitchG13||||7_555G15||||7_555*C40||||7_555C41||||7_555cWWcWW
25 IL_4AOB_0014AOB0.13931Single bulged AA SAM-I riboswitchG13G15*C40C41cWWcWW
26 IL_1JZV_0021JZV0.17071Single bulged AB+ARNA (9-mer)U12C14*G4A5cWWcWW
27 IL_4V9F_0794V9F0.15691Single bulged A0 LSU rRNAU2290C2292*G2279A2280cWWcWW
28 IL_1U63_0041U630.17741Single bulged AD49 NT FRAGMENT OF MRNA FOR L1G28A30*U16C17cWWcWW
29 IL_2YGH_0012YGH0.20011Single bulged AA SAM-I riboswitchG13G15*C40C41cWWcWW
30 IL_2YGH_0052YGH0.20011Single bulged AA SAM-I riboswitchG13||||8_554G15||||8_554*C40||||8_554C41||||8_554cWWcWW
31 IL_2VPL_0022VPL0.20541Single bulged ABFRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITEG28A30*U16C17cWWcWW
32 IL_4P3U_0024P3U0.30611Single bulged AB+ARNA (23-mer)A40G42*C7U8ncWWcWW
33 IL_5TBW_0985TBW0.13971Single bulged A1 LSU rRNAC2625C2627*G2614G2615cWWcWW
34 IL_5J7L_0025J7L0.14221Single bulged AAA SSU rRNAC396U398*A44G45cWWcWW
35 IL_5FJC_0015FJC0.15121Single bulged AA SAM-I riboswitchG13G15*C40C41cWWcWW
36 IL_4P43_0024P430.13071Single bulged AB+ARNA (23-mer)A40G42*C7U8cWWcWW
37 IL_4P43_0034P430.15371Single bulged AA+BRNA (23-mer)A17G19*C30U31cWWcWW
38 IL_4PHY_0024PHY0.24171Single bulged AB+ARNA (20-mer)G38G40*C12C13cWWcWW
39 IL_5J7L_3445J7L0.21911Single bulged ADA LSU rRNAC2601G2603*C2591G2592cWWcWW
40 IL_4V9F_0904V9F0.17301Single bulged A0 LSU rRNAC2636G2638*C2626G2627cWWcWW
41 IL_5TBW_1135TBW0.19271Single bulged A1 LSU rRNAC2970G2972*C2960G2961cWWcWW
42 IL_4V88_4524V880.26351Single bulged AA6 SSU rRNAC1426G1428*C1280G1281cWWcWW
43 IL_2QUX_0022QUX0.26991Single bulged AFRNA (25-MER)C5G7*C20G21cWWcWW
44 IL_4V9F_0644V9F0.20181Single bulged A0 LSU rRNAC2021G2023*C1826G1827cWWcWW
45 IL_4Y4O_2104Y4O0.31031Single bulged A2A LSU rRNAU895C897*G880G881cWWcWW
46 IL_5TBW_0605TBW0.40681Single bulged A1 LSU rRNAU1398G1400*C1411G1412cWWcWW
47 IL_4R4V_0104R4V0.25121Single bulged AAVS ribozyme RNAU712||||7_556G714||||7_556*C660||||7_556A661||||7_556cWWcWW
48 IL_4R4V_0044R4V0.25121Single bulged AAVS ribozyme RNAU712G714*C660A661cWWcWW
49 IL_4WF9_0064WF90.30501Single bulged AX LSU rRNAC175G177*C152G153cWWcWW
50 IL_4PHY_0044PHY0.33061Single bulged AA+BRNA (26-MER) + RNA (20-mer)C20C22*G30G31ncWWcWW
51 IL_6CYT_0016CYT0.43111Single bulged ANRNA (17-mer)C29C30*G34G36cWWcWW
52 IL_3V7E_0013V7E0.41091Single bulged AC SAM-I riboswitchC40C41*G13G15cWWcWW
53 IL_3OXE_0013OXE0.44241Single bulged AAdomain II of glycine riboswitchU27C28*G12A14cWWcWW
54 IL_4Y4O_1964Y4O0.35181Single bulged A2A LSU rRNAC697C698*G763G765cWWcWW
55 IL_4IOA_0154IOA0.32391Single bulged AX LSU rRNAC710C711*G776G778cWWcWW
56 IL_4Y4O_2354Y4O0.38111Single bulged A2A LSU rRNAC1450|||AC1451*G1459G1461cWWcWW
57 IL_4WF9_0224WF90.41531Single bulged AX LSU rRNAU742C743*G808A810cWWcWW
58 IL_5TBW_0825TBW0.33031Single bulged A1 LSU rRNAG2323G2325*C2128U2129cWWcWW
59 IL_4WF9_0024WF90.26221Single bulged AX LSU rRNAG488C490*G36C37cWWcWW
60 IL_5J7L_2465J7L0.25971Single bulged ADA LSU rRNAG442C444*G36C37cWWcWW
61 IL_4Y4O_1804Y4O0.32221Single bulged A2A LSU rRNAG442C444*G36C37cWWcWW
62 IL_4IOA_0024IOA0.34681Single bulged AX LSU rRNAG454C456*G36C37cWWcWW
63 IL_1NBS_0051NBS0.33141Single bulged AB RNase P class BG129C131*G113C114cWWcWW
64 IL_5TBW_1235TBW0.32731Single bulged A1 LSU rRNAG3177U3179*A3210C3211cWWcWW
65 IL_1DUQ_0021DUQ0.38701Single bulged AB+ATHE REV BINDING ELEMENTG120C122*G108C109cWWcWW
66 IL_1CSL_0021CSL0.41401Single bulged AB+ARNA (15-mer)G67C69*G50C51cWWcWW
67 IL_4IOA_0114IOA0.46791Single bulged AX LSU rRNAG600C602*G678C679cWWcWW
68 IL_1U9S_0011U9S0.40721Single bulged AARIBONUCLEASE PG107C109*G95C96cWWcWW
69 IL_4V9F_0024V9F0.36981Single bulged A0 LSU rRNAG448C450*G33C34cWWcWW
70 IL_4Y4O_2424Y4O0.46041Single bulged A2A LSU rRNAG1980C1982*G1770C1771cWWcWW
71 IL_4LFB_0024LFB0.45671Single bulged AA SSU rRNAG396C398*G44U45cWWcWW
72 IL_5TBW_0135TBW0.46511Single bulged A1+4 LSU rRNA + 5.8S rRNAG337C339*G25U26cWWcWW
73 IL_4WF9_0684WF90.52661Single bulged AX LSU rRNAG2007U2009*G1797C1798cWWcWW
74 IL_5J7L_3125J7L0.52131Single bulged ADA LSU rRNAG1980U1982*G1770C1771cWWcWW
75 IL_4IOA_0644IOA0.56021Single bulged AX LSU rRNAG1963U1965*G1761C1762cWWcWW
76 IL_5J7L_2615J7L0.58021Single bulged ADA LSU rRNAG697C698*G763C765cWWcWW
77 IL_6CZR_1146CZR0.56131Single bulged A1a SSU rRNAG392C394*G45U46cWWcWW
78 IL_4V88_4094V880.38641Single bulged AA6 SSU rRNAA505U507*A481U482cWWcWW
79 IL_5WWT_0015WWT0.36051Single bulged AC tRNAG37U39*A31C32cWWcWW
80 IL_4V88_3994V880.34401Single bulged AA6 SSU rRNAA265U267*A288U289cWWcWW
81 IL_4Y4O_2244Y4O0.40841Single bulged A2A LSU rRNAG1219C1221*G1229C1230cWWcWW
82 IL_5TBW_0455TBW0.37881Single bulged A1 LSU rRNAU1074C1076*G1083A1084cWWcWW
83 IL_4V88_4414V880.38051Single bulged AA6 SSU rRNAU1630C1632*G1146A1147cWWcWW
84 IL_4LFB_0354LFB0.39411Single bulged AA SSU rRNAU1393C1395*G922A923cWWcWW
85 IL_5J7L_0395J7L0.37851Single bulged AAA SSU rRNAU1393C1395*G922A923cWWcWW
86 IL_6CZR_1476CZR0.41111Single bulged A1a SSU rRNAU1376C1378*G900A901cWWcWW
87 IL_4V9F_0984V9F0.32371Single bulged A0 LSU rRNAC2895C2897*G2860G2861cWWcWW
88 IL_5FDV_1115FDV0.51681Single bulged A1B 5S rRNAC65G67*C17G18cWWcWW
89 IL_4V9F_1014V9F0.50781Major groove intercalation9 5S rRNAC64G66*C15G16cWWcWW
90 IL_5J7L_3025J7L0.46511Single bulged ADA LSU rRNAC1489G1491*C1499G1500cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CG12
GAC*GC12
CC*GAG11
GAG*CC8
UAC*GA7
AAG*CU4
CG*CAG3
CU*AAG3
GAA*UC3
CAC*GG3
GAC*GU3
GAU*GC3
GG*CAC2
UAA*UA2
UAG*CA2
UC*GAA2
GAU*AC2
AAU*AU2
UG*CAA1
CAU*AG1
UAC*GG1
UAG*CG1
GAG*CU1
GC*GAC1
Non-Watson-Crick part of the motif
SequenceCounts
A*67
*A23

Release history

Release3.373.383.393.403.413.423.433.443.45
Date2020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-26
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single bulged A (89)
  • Major groove intercalation (1)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.04 | Avg 0.41 | Max 0.98
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