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Motif IL_80007.12 Version IL_80007.12 of this group appears in releases 3.46 to 3.46

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2break 3 41-42-3
1 IL_6CYT_0016CYT0.39571Single bulged ANRNA (17-mer)C29C30*G34G36cWWcWW
2 IL_5TBW_0585TBW0.48431Single bulged A1 LSU rRNAC1420G1421*C1385G1387cWWcWW
3 IL_5J7L_0495J7L0.26461Single bulged AAA SSU rRNAU1060G1061*C1195A1197cWWcWW
4 IL_1MFQ_0051MFQ0.38991Single bulged AA SRP RNAG175G177*C220C221cWWcWW
5 IL_4R4V_0034R4V0.33541Single bulged AAVS ribozyme RNAC651G653*C766G767cWWcWW
6 IL_4R4V_0094R4V0.33541Single bulged AAVS ribozyme RNAC651||||7_556G653||||7_556*C766||||7_556G767||||7_556cWWcWW
7 IL_4WF9_0064WF90.31731Single bulged AX LSU rRNAC175G177*C152G153cWWcWW
8 IL_4PHY_0044PHY0.35971Single bulged AA+BRNA (26-MER) + RNA (20-mer)C20C22*G30G31ncWWcWW
9 IL_5J7L_3445J7L0.29471Single bulged ADA LSU rRNAC2601G2603*C2591G2592cWWcWW
10 IL_4V9F_0904V9F0.24221Single bulged A0 LSU rRNAC2636G2638*C2626G2627cWWcWW
11 IL_5TBW_1135TBW0.27131Single bulged A1 LSU rRNAC2970G2972*C2960G2961cWWcWW
12 IL_4V88_4524V880.33041Single bulged AA6 SSU rRNAC1426G1428*C1280G1281cWWcWW
13 IL_2QUX_0022QUX0.33091Single bulged AFRNA (25-MER)C5G7*C20G21cWWcWW
14 IL_4V9F_0644V9F0.24421Single bulged A0 LSU rRNAC2021G2023*C1826G1827cWWcWW
15 IL_4R4V_0104R4V0.29721Single bulged AAVS ribozyme RNAU712||||7_556G714||||7_556*C660||||7_556A661||||7_556cWWcWW
16 IL_4R4V_0044R4V0.29721Single bulged AAVS ribozyme RNAU712G714*C660A661cWWcWW
17 IL_5TBW_0605TBW0.45261Single bulged A1 LSU rRNAU1398G1400*C1411G1412cWWcWW
18 IL_4Y4O_2104Y4O0.35841Single bulged A2A LSU rRNAU895C897*G880G881cWWcWW
19 IL_4PHY_0024PHY0.35761Single bulged AB+ARNA (20-mer)G38G40*C12C13cWWcWW
20 IL_4P43_0034P430.25171Single bulged AA+BRNA (23-mer)A17G19*C30U31cWWcWW
21 IL_4P43_0024P430.23661Single bulged AB+ARNA (23-mer)A40G42*C7U8cWWcWW
22 IL_5FJC_0015FJC0.23971Single bulged AA SAM-I riboswitchG13G15*C40C41cWWcWW
23 IL_5J7L_0025J7L0.19231Single bulged AAA SSU rRNAC396U398*A44G45cWWcWW
24 IL_5TBW_0985TBW0.13101Single bulged A1 LSU rRNAC2625C2627*G2614G2615cWWcWW
25 IL_1JZV_0021JZV0.14851Single bulged AB+ARNA (9-mer)U12C14*G4A5cWWcWW
26 IL_4V9F_0794V9F0.00001Single bulged A0 LSU rRNAU2290C2292*G2279A2280cWWcWW
27 IL_1U63_0041U630.14441Single bulged AD49 NT FRAGMENT OF MRNA FOR L1G28A30*U16C17cWWcWW
28 IL_4AOB_0064AOB0.19861Single bulged AA SAM-I riboswitchG13||||7_555G15||||7_555*C40||||7_555C41||||7_555cWWcWW
29 IL_4AOB_0014AOB0.19861Single bulged AA SAM-I riboswitchG13G15*C40C41cWWcWW
30 IL_5AOX_0025AOX0.15691Single bulged ACALU JO CONSENSUS RNAG56G58*C108C109cWWcWW
31 IL_4P3U_0114P3U0.17821Single bulged AC+DRNA (23-mer)A17G19*C30U31cWWcWW
32 IL_6WPI_0016WPI0.19761Single bulged ABRNA (47-MER)G11A13*U41C42cWWcWW
33 IL_4P3U_0054P3U0.21041Single bulged AB+ARNA (23-mer)C30U31*A17G19cWWcWW
34 IL_5TBW_3725TBW0.25021Single bulged AAS 5S rRNAC15U16*A63G65cWWcWW
35 IL_4P3U_0084P3U0.20681Single bulged AC+DRNA (23-mer)C7U8*A40G42cWWcWW
36 IL_3MJA_0013MJA0.31291Single bulged ABDomain 3 of the cricket paralysis virus intergenic region IRES RNAC6194G6195*C6181G6183cWWcWW
37 IL_1I9X_0011I9X0.19361Single bulged AA+BRNA (13-mer)U4A6*U9A10cWWcWW
38 IL_1I9X_0021I9X0.17151Single bulged AB+ARNA (13-mer)U4A6*U9A10cWWcWW
39 IL_2C4Q_0052C4Q0.21761Single bulged ARRNA (19-mer)C14||||P_PC15||||P_P*G5||||P_PG7||||P_P
40 IL_2C4Q_0012C4Q0.21761Single bulged ARRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
41 IL_6D3P_0026D3P0.19741Single bulged AARNA (45-MER)C12||||12_566C13||||12_566*G27||||12_566G29||||12_566cWWcWW
42 IL_6D3P_0046D3P0.19741Single bulged AARNA (45-MER)C12C13*G27G29cWWcWW
43 IL_7KGA_0027KGA0.24361Single bulged AAFlavivirus DB elementC14A15*U39G41cWWcWW
44 IL_5TBW_0245TBW0.25661Single bulged A1 LSU rRNAC752C753*G779G781cWWcWW
45 IL_4LGT_0024LGT0.24371Single bulged AEstem-loop of 23S rRNAC2591G2592*C2601G2603cWWcWW
46 IL_6MSF_0036MSF0.27581Single bulged ARRNA (14-mer)G12||||P_PG13||||P_P*C2||||P_PC4||||P_P
47 IL_6MSF_0016MSF0.27581Single bulged ARRNA (14-mer)G12||||P_1G13||||P_1*C2||||P_1C4||||P_1cWWcWW
48 IL_5M73_0075M730.32071Single bulged AA SRP RNAC220C221*G175G177cWWncWW
49 IL_4P3U_0024P3U0.26261Single bulged AB+ARNA (23-mer)A40G42*C7U8ncWWcWW
50 IL_3V7E_0013V7E0.32771Single bulged AC SAM-I riboswitchC40C41*G13G15cWWcWW
51 IL_3OXE_0013OXE0.37231Single bulged AAdomain II of glycine riboswitchU27C28*G12A14cWWcWW
52 IL_4Y4O_1964Y4O0.28361Single bulged A2A LSU rRNAC697C698*G763G765cWWcWW
53 IL_4IOA_0154IOA0.25321Single bulged AX LSU rRNAC710C711*G776G778cWWcWW
54 IL_4Y4O_2354Y4O0.32781Single bulged A2A LSU rRNAC1450|||AC1451*G1459G1461cWWcWW
55 IL_4WF9_0224WF90.35761Single bulged AX LSU rRNAU742C743*G808A810cWWcWW
56 IL_5TBW_0825TBW0.31881Single bulged A1 LSU rRNAG2323G2325*C2128U2129cWWcWW
57 IL_2VPL_0022VPL0.19161Single bulged ABFRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITEG28A30*U16C17cWWcWW
58 IL_4WF9_0024WF90.23811Single bulged AX LSU rRNAG488C490*G36C37cWWcWW
59 IL_5J7L_2465J7L0.23101Single bulged ADA LSU rRNAG442C444*G36C37cWWcWW
60 IL_4Y4O_1804Y4O0.30051Single bulged A2A LSU rRNAG442C444*G36C37cWWcWW
61 IL_4IOA_0024IOA0.30571Single bulged AX LSU rRNAG454C456*G36C37cWWcWW
62 IL_1NBS_0051NBS0.32771Single bulged AB RNase P class BG129C131*G113C114cWWcWW
63 IL_5TBW_1235TBW0.34791Single bulged A1 LSU rRNAG3177U3179*A3210C3211cWWcWW
64 IL_1DUQ_0021DUQ0.38061Single bulged AB+ATHE REV BINDING ELEMENTG120C122*G108C109cWWcWW
65 IL_1CSL_0021CSL0.40311Single bulged AB+ARNA (15-mer)G67C69*G50C51cWWcWW
66 IL_4IOA_0114IOA0.43821Single bulged AX LSU rRNAG600C602*G678C679cWWcWW
67 IL_1U9S_0011U9S0.41131Single bulged AARIBONUCLEASE PG107C109*G95C96cWWcWW
68 IL_4V9F_0024V9F0.37821Single bulged A0 LSU rRNAG448C450*G33C34cWWcWW
69 IL_4Y4O_2424Y4O0.44261Single bulged A2A LSU rRNAG1980C1982*G1770C1771cWWcWW
70 IL_4LFB_0024LFB0.45521Single bulged AA SSU rRNAG396C398*G44U45cWWcWW
71 IL_5TBW_0135TBW0.45451Single bulged A1+4 LSU rRNA + 5.8S rRNAG337C339*G25U26cWWcWW
72 IL_4WF9_0684WF90.47461Single bulged AX LSU rRNAG2007U2009*G1797C1798cWWcWW
73 IL_5J7L_3125J7L0.46671Single bulged ADA LSU rRNAG1980U1982*G1770C1771cWWcWW
74 IL_4IOA_0644IOA0.51901Single bulged AX LSU rRNAG1963U1965*G1761C1762cWWcWW
75 IL_5J7L_2615J7L0.54411Single bulged ADA LSU rRNAG697C698*G763C765cWWcWW
76 IL_6CZR_1146CZR0.54421Single bulged A1a SSU rRNAG392C394*G45U46cWWcWW
77 IL_4Y4O_2244Y4O0.41931Single bulged A2A LSU rRNAG1219C1221*G1229C1230cWWcWW
78 IL_4V88_3994V880.34581Single bulged AA6 SSU rRNAA265U267*A288U289cWWcWW
79 IL_5WWT_0015WWT0.38131Single bulged AC tRNAG37U39*A31C32cWWcWW
80 IL_4V88_4094V880.40581Single bulged AA6 SSU rRNAA505U507*A481U482cWWcWW
81 IL_7KGA_0057KGA0.44151Single bulged ABFlavivirus DB elementU39G41*C14A15cWWcWW
82 IL_6CZR_1476CZR0.46921Single bulged A1a SSU rRNAU1376C1378*G900A901cWWcWW
83 IL_5J7L_0395J7L0.41681Single bulged AAA SSU rRNAU1393C1395*G922A923cWWcWW
84 IL_4LFB_0354LFB0.42491Single bulged AA SSU rRNAU1393C1395*G922A923cWWcWW
85 IL_4V88_4414V880.41831Single bulged AA6 SSU rRNAU1630C1632*G1146A1147cWWcWW
86 IL_5TBW_0455TBW0.39861Single bulged A1 LSU rRNAU1074C1076*G1083A1084cWWcWW
87 IL_4V9F_0984V9F0.34691Single bulged A0 LSU rRNAC2895C2897*G2860G2861cWWcWW
88 IL_5FDV_1115FDV0.55821Single bulged A1B 5S rRNAC65G67*C17G18cWWcWW
89 IL_4V9F_1014V9F0.53571Major groove intercalation9 5S rRNAC64G66*C15G16cWWcWW
90 IL_5J7L_3025J7L0.52821Single bulged ADA LSU rRNAC1489G1491*C1499G1500cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CG12
GAC*GC12
CC*GAG11
UAC*GA7
GAG*CC6
AAG*CU4
CG*CAG3
CAC*GG3
UAG*CA3
GAA*UC3
CU*AAG3
GAC*GU3
GAU*GC3
UAA*UA2
GG*CAC2
UC*GAA2
GAU*AC2
AAU*AU2
UG*CAA1
UAG*CG1
UAC*GG1
CAU*AG1
CA*UAG1
GAG*CU1
GC*GAC1
Non-Watson-Crick part of the motif
SequenceCounts
A*66
*A24

Release history

Release3.46
Date2021-06-23
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single bulged A (89)
  • Major groove intercalation (1)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.04 | Avg 0.41 | Max 0.98
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