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Motif IL_80007.15 Version IL_80007.15 of this group appears in releases 3.54 to 3.61

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_7RQB_1117RQB0.64771Major groove intercalation1B 5S rRNAC65G67*C17G18cWWcWW
2 IL_5J7L_3025J7L0.57481Single bulged ADA LSU rRNAC1489G1491*C1499G1500cWWcWW
3 IL_5TBW_0605TBW0.45691Single bulged A1 LSU rRNAU1398G1400*C1411G1412cWWcWW
4 IL_7RQB_0337RQB0.38171Single bulged A1A LSU rRNAU895C897*G880G881cWWcWW
5 IL_4PHY_0044PHY0.32721Single bulged AA+BRNA (26-MER) + RNA (20-mer)C20C22*G30G31ncWWcWW
6 IL_2QUX_0022QUX0.30221Single bulged AFRNA (25-MER)C5G7*C20G21cWWcWW
7 IL_5TBW_1135TBW0.21981Single bulged A1 LSU rRNAC2970G2972*C2960G2961cWWcWW
8 IL_5J7L_3445J7L0.22381Single bulged ADA LSU rRNAC2601G2603*C2591G2592cWWcWW
9 IL_7RQB_1017RQB0.26671Single bulged A1A LSU rRNAC2601G2603*C2591G2592cWWcWW
10 IL_4PHY_0024PHY0.36241Single bulged AB+ARNA (20-mer)G38G40*C12C13cWWcWW
11 IL_4P43_0034P430.25031Single bulged AA+BRNA (23-mer)A17G19*C30U31cWWcWW
12 IL_4P43_0024P430.25051Single bulged AB+ARNA (23-mer)A40G42*C7U8cWWcWW
13 IL_5FJC_0015FJC0.29191Single bulged AA SAM-I riboswitchG13G15*C40C41cWWcWW
14 IL_5J7L_0025J7L0.23571Single bulged AAA SSU rRNAC396U398*A44G45cWWcWW
15 IL_5TBW_0985TBW0.20521Single bulged A1 LSU rRNAC2625C2627*G2614G2615cWWcWW
16 IL_4AOB_0064AOB0.22871Single bulged AA SAM-I riboswitchG13||||7_555G15||||7_555*C40||||7_555C41||||7_555cWWcWW
17 IL_4AOB_0014AOB0.22871Single bulged AA SAM-I riboswitchG13G15*C40C41cWWcWW
18 IL_1JZV_0021JZV0.22341Single bulged AB+ARNA (9-mer)U12C14*G4A5cWWcWW
19 IL_1U63_0041U630.22481Single bulged AD49 NT FRAGMENT OF MRNA FOR L1G28A30*U16C17cWWcWW
20 IL_3V7E_0013V7E0.28011Single bulged AC SAM-I riboswitchC40C41*G13G15cWWcWW
21 IL_4P3U_0024P3U0.24381Single bulged AB+ARNA (23-mer)A40G42*C7U8ncWWcWW
22 IL_5TBW_3725TBW0.18021Single bulged AAS 5S rRNAC15U16*A63G65cWWcWW
23 IL_4P3U_0084P3U0.17691Single bulged AC+DRNA (23-mer)C7U8*A40G42cWWcWW
24 IL_4P3U_0054P3U0.17561Single bulged AB+ARNA (23-mer)C30U31*A17G19cWWcWW
25 IL_6WPI_0016WPI0.16611Single bulged ABRNA (47-MER)G11A13*U41C42cWWcWW
26 IL_4P3U_0114P3U0.13751Single bulged AC+DRNA (23-mer)A17G19*C30U31cWWcWW
27 IL_1I9X_0011I9X0.12791Single bulged AA+BRNA (13-mer)U4A6*U9A10cWWcWW
28 IL_1I9X_0021I9X0.00001Single bulged AB+ARNA (13-mer)U4A6*U9A10cWWcWW
29 IL_2C4Q_0052C4Q0.13371Single bulged ARRNA (19-mer)C14||||P_PC15||||P_P*G5||||P_PG7||||P_P
30 IL_2C4Q_0012C4Q0.13371Single bulged ARRNA (19-mer)C14||||P_1C15||||P_1*G5||||P_1G7||||P_1cWWcWW
31 IL_6D3P_0026D3P0.15621Single bulged AARNA (45-MER)C12||||12_566C13||||12_566*G27||||12_566G29||||12_566cWWcWW
32 IL_6D3P_0046D3P0.15621Single bulged AARNA (45-MER)C12C13*G27G29cWWcWW
33 IL_7KGA_0027KGA0.18471Single bulged AAFlavivirus DB elementC14A15*U39G41cWWcWW
34 IL_4LGT_0024LGT0.20441Single bulged AEstem-loop of 23S rRNAC2591G2592*C2601G2603cWWcWW
35 IL_6MSF_0016MSF0.19371Single bulged ARRNA (14-mer)G12||||P_1G13||||P_1*C2||||P_1C4||||P_1cWWcWW
36 IL_6MSF_0036MSF0.19371Single bulged ARRNA (14-mer)G12||||P_PG13||||P_P*C2||||P_PC4||||P_P
37 IL_5TBW_0245TBW0.23951Single bulged A1 LSU rRNAG779G781*C752C753cWWcWW
38 IL_3MJA_0013MJA0.21031Single bulged ABDomain 3 of the cricket paralysis virus intergenic region IRES RNAC6194G6195*C6181G6183cWWcWW
39 IL_4R4V_0104R4V0.31081Single bulged AAVS ribozyme RNAU712||||7_556G714||||7_556*C660||||7_556A661||||7_556cWWcWW
40 IL_4R4V_0044R4V0.31081Single bulged AAVS ribozyme RNAU712G714*C660A661cWWcWW
41 IL_5J7L_0495J7L0.28411Single bulged AAA SSU rRNAU1060G1061*C1195A1197cWWcWW
42 IL_4R4V_0094R4V0.29571Single bulged AAVS ribozyme RNAC651||||7_556G653||||7_556*C766||||7_556G767||||7_556cWWcWW
43 IL_4R4V_0034R4V0.29571Single bulged AAVS ribozyme RNAC651G653*C766G767cWWcWW
44 IL_1MFQ_0051MFQ0.36071Single bulged AA SRP RNAG175G177*C220C221cWWcWW
45 IL_5TBW_0585TBW0.49901Single bulged A1 LSU rRNAC1420G1421*C1385G1387cWWcWW
46 IL_4WF9_0064WF90.37881Single bulged AX LSU rRNAC152G153*C175G177cWWcWW
47 IL_4V88_4524V880.30611Single bulged AA6 SSU rRNAC1280G1281*C1426G1428cWWcWW
48 IL_4V9F_0644V9F0.36771Single bulged A0 LSU rRNAC1826G1827*C2021G2023cWWcWW
49 IL_4V9F_0904V9F0.30471Single bulged A0 LSU rRNAC2626G2627*C2636G2638cWWcWW
50 IL_5AOX_0025AOX0.33151Single bulged ACALU JO CONSENSUS RNAC108C109*G56G58cWWcWW
51 IL_4V9F_0794V9F0.32601Single bulged A0 LSU rRNAG2279A2280*U2290C2292cWWcWW
52 IL_6CYT_0016CYT0.40421Single bulged ANRNA (17-mer)G34G36*C29C30cWWcWW
53 IL_5WWT_0015WWT0.41521Single bulged AC tRNAG37U39*A31C32cWWcWW
54 IL_7KGA_0057KGA0.48781Single bulged ABFlavivirus DB elementU39G41*C14A15cWWcWW
55 IL_6CZR_1476CZR0.51621Single bulged A1a SSU rRNAU1376C1378*G900A901cWWcWW
56 IL_5J7L_0395J7L0.46401Single bulged AAA SSU rRNAU1393C1395*G922A923cWWcWW
57 IL_4LFB_0354LFB0.48071Single bulged AA SSU rRNAU1393C1395*G922A923cWWcWW
58 IL_5TBW_0455TBW0.46291Single bulged A1 LSU rRNAU1074C1076*G1083A1084cWWcWW
59 IL_7RQB_0487RQB0.46251Single bulged A1A LSU rRNAG1219C1221*G1229C1230cWWcWW
60 IL_7RQB_0697RQB0.46561Single bulged A1A LSU rRNAG1980C1982*G1770C1771cWWcWW
61 IL_1U9S_0011U9S0.42131Single bulged AARIBONUCLEASE PG107C109*G95C96cWWcWW
62 IL_1CSL_0021CSL0.40471Single bulged AB+ARNA (15-mer)G67C69*G50C51cWWcWW
63 IL_1DUQ_0021DUQ0.37851Single bulged AB+ATHE REV BINDING ELEMENTG120C122*G108C109cWWcWW
64 IL_5TBW_1235TBW0.36461Single bulged A1 LSU rRNAG3177U3179*A3210C3211cWWcWW
65 IL_4LFB_0024LFB0.48281Single bulged AA SSU rRNAG396C398*G44U45cWWcWW
66 IL_5TBW_0135TBW0.46411Single bulged A1+4 LSU rRNA + 5.8S rRNAG337C339*G25U26cWWcWW
67 IL_5J7L_3125J7L0.49861Single bulged ADA LSU rRNAG1980U1982*G1770C1771cWWcWW
68 IL_7A0S_0647A0S0.49651Single bulged AX LSU rRNAG1963U1965*G1761C1762cWWcWW
69 IL_4V9F_0254V9F0.58111Single bulged A0 LSU rRNAA788C789*G856U858cWWcWW
70 IL_5J7L_2615J7L0.56691Single bulged ADA LSU rRNAG697C698*G763C765cWWcWW
71 IL_4WF9_0224WF90.38911Single bulged AX LSU rRNAU742C743*G808A810cWWcWW
72 IL_7RQB_0597RQB0.35991Single bulged A1A LSU rRNAC1450|||AC1451*G1459G1461cWWcWW
73 IL_7A0S_0167A0S0.29251Single bulged AX LSU rRNAC710C711*G776G778cWWcWW
74 IL_7RQB_0197RQB0.27741Single bulged A1A LSU rRNAC697C698*G763G765cWWcWW
75 IL_3OXE_0013OXE0.37231Single bulged AAdomain II of glycine riboswitchU27C28*G12A14cWWcWW
76 IL_7A0S_0127A0S0.35691Single bulged AX LSU rRNAG600C602*G678C679cWWcWW
77 IL_1NBS_0051NBS0.28331Single bulged AB RNase P class BG129C131*G113C114cWWcWW
78 IL_7A0S_0027A0S0.27331Single bulged AX LSU rRNAG454C456*G36C37cWWcWW
79 IL_7RQB_0027RQB0.25981Single bulged A1A LSU rRNAG442C444*G36C37cWWcWW
80 IL_5J7L_2465J7L0.22301Single bulged ADA LSU rRNAG442C444*G36C37cWWcWW
81 IL_2VPL_0022VPL0.18561Single bulged ABFRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITEG28A30*U16C17cWWcWW
82 IL_5TBW_0825TBW0.34941Single bulged A1 LSU rRNAG2323G2325*C2128U2129cWWcWW
83 IL_6CZR_1146CZR0.58041Single bulged A1a SSU rRNAG392C394*G45U46cWWcWW
84 IL_4WF9_0684WF90.52191Single bulged AX LSU rRNAG1797C1798*G2007U2009cWWcWW
85 IL_4WF9_0024WF90.36131Single bulged AX LSU rRNAG36C37*G488C490cWWcWW
86 IL_4V88_4094V880.50341Single bulged AA6 SSU rRNAA481U482*A505U507cWWcWW
87 IL_4V9F_0024V9F0.48781Single bulged A0 LSU rRNAG33C34*G448C450cWWcWW
88 IL_4V88_3994V880.50151Single bulged AA6 SSU rRNAA288U289*A265U267cWWcWW
89 IL_4V88_4414V880.59081Single bulged AA6 SSU rRNAG1146A1147*U1630C1632cWWcWW
90 IL_4V9F_0984V9F0.57931Single bulged A0 LSU rRNAG2860G2861*C2895C2897cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAC*GC10
CC*GAG9
CAG*CG8
GAG*CC7
CG*CAG7
UAC*GA5
AAG*CU4
GAA*UC3
CU*AAG3
GG*CAC3
UAG*CA3
GAC*GU3
GC*GAC3
CAC*GG2
UAA*UA2
GA*UAC2
GAU*AC2
GAU*GC2
UC*GAA2
AU*AAU2
UAG*CG1
UAC*GG1
CAU*AG1
CA*UAG1
UG*CAA1
AC*GAU1
GAG*CU1
GC*GAU1
Non-Watson-Crick part of the motif
SequenceCounts
A*55
*A35

Release history

Release3.543.553.563.573.583.593.603.61
Date2022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-17
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single bulged A (89)
  • Major groove intercalation (1)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.04 | Avg 0.44 | Max 1.00
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