Motif IL_80494.2 Version IL_80494.2 of this group appears in releases 0.7 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3B5F_001 | 3B5F | 0.8765 | 0 | A+B | Loop A Substrate strand + 29-mer Loop A and Loop B Ribozyme strand | C | 4 | A | 5 | G | 6 | U | 7 | C | 8 | C | 9 | * | G | 6 | A | 7 | G | 8 | A | 9 | A | 10 | G | 11 | cWW | tSH | tHS | ncWWa | cWW | ||
| 2 | IL_3P49_012 | 3P49 | 0.0000 | 1 | A | Glycine riboswitch | G | 116 | C | 117 | A | 118 | A | 119 | A | 120 | G | 121 | * | C | 132 | C | 133 | U | 134 | A | 135 | A | 136 | C | 138 | cWW | tWH | ncWW | cWW | |||
| 3 | IL_1S72_057 | 1S72 | 0.2977 | 1 | 0 | LSU rRNA | C | 1578 | C | 1579 | A | 1580 | A | 1581 | C | 1582 | U | 1583 | * | A | 1612 | C | 1613 | G | 1614 | A | 1615 | A | 1616 | G | 1618 | cWW | ntWH | tHS | ncBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUCC*GAGAAG | 1 |
| GCAAAG*CCUAAAC | 1 |
| CCAACU*ACGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUC*AGAA | 1 |
| CAAA*CUAAA | 1 |
| CAAC*CGAAC | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_80494.2 | Only in the parent motif |
|---|---|---|---|
| IL_80494.1 Compare | IL_3P49_012, IL_1S72_057, IL_3B5F_001 | IL_4A1B_017 |
Children motifs
| Child motif | Common motif instances | Only in IL_80494.2 | Only in the child motif |
|---|---|---|---|
| IL_80494.3 Compare | IL_3P49_012, IL_1S72_057 | IL_3B5F_001 | |
| IL_37171.1 Compare | IL_3B5F_001 | IL_3P49_012, IL_1S72_057 | IL_4NVV_033, IL_3U5F_038 |
- Annotations
- Basepair signature
- cWW-tWH-L-R-tHS-bif-cWW
- Heat map statistics
- Min 0.30 | Avg 0.47 | Max 0.92
Coloring options: