Motif IL_87767.1 Version IL_87767.1 of this group appears in releases 4.0 to 4.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6
1	IL_7A0S_056	7A0S	0.3956	0	Double sheared with near cWW	X	LSU rRNA	C	1529	U	1530	C	1531	A	1532	G	1533	*	C	1491	A	1492	A	1493	G	1494	G	1495	cWW			tHS	ncWW
2	IL_8GLP_204	8GLP	0.2894	0		S2	SSU rRNA	C	188	U	189	G	190	A	191	C	192	*	G	207	G	208	A	209	U	210	G	211	cWW	ncwW	tSH	tHS	cWW
3	IL_4WFL_001	4WFL	0.2344	0	Double sheared with non-canonical cWW	A	LSRP RNA	U	72	C	73	G	74	A	75	G	76	*	C	91	G	92	A	93	C	94	A	95	cWW	cWB	tSH	tHS	cWW
4	IL_8B0X_094	8B0X	0.2500	0	Double sheared with non-canonical cWW (H)	a	LSU rRNA	G	877	C	878	A	879	A	880	G	881	*	C	900	A	901	A	902	C	903	C	904	cWW	cWB	tSH	tHS	cWW
5	IL_1U6B_002	1U6B	0.2933	0	Double sheared with non-canonical cWW	B	197-MER	G	84	C	85	A	86	A	87	C	88	*	G	56	A	57	A	58	A	59	C	60	cWW	ncWW	tSH	tHS	cWW
6	IL_9DFE_095	9DFE	0.2370	0	Double sheared with non-canonical cWW	1A	LSU rRNA	C	2466	C	2467	G	2468	A	2469	G	2470	*	C	2480	G	2481	G	2482	C	2483	G	2484	cWW	cWB		tHS	cWW
7	IL_9E6Q_087	9E6Q	0.2193	0	Double sheared with non-canonical cWW (H)	1	LSU rRNA	G	2580	U	2581	G	2582	A	2583	G	2584	*	C	2594	G	2595	A	2596	C	2597	C	2598	cWW		ntSH	tHS	cWW
8	IL_8GLP_145	8GLP	0.2049	0		L5	LSU rRNA	C	4412	C	4413	A	4414	A	4415	G	4416	*	C	4426	G	4427	A	4428	C	4429	G	4430	cWW	ncWB	tSH	tHS	cWW
9	IL_8P9A_333	8P9A	0.1647	0	Double sheared with non-canonical cWW	AR	LSU rRNA	U	2835	C	2836	A	2837	A	2838	G	2839	*	C	2849	G	2850	A	2851	C	2852	A	2853	cWW		tSH	tHS	cWW
10	IL_8OI5_106	8OI5	0.1620	0		1	LSU rRNA	U	2807	C	2808	A	2809	A	2810	G	2811	*	C	2821	G	2822	A	2823	C	2824	A	2825	cWW		tSH	tHS	cWW
11	IL_7A0S_087	7A0S	0.1415	0	Double sheared with non-canonical cWW	X	LSU rRNA	C	2445	C	2446	G	2447	A	2448	G	2449	*	C	2459	G	2460	G	2461	C	2462	G	2463	cWW	ncWB		tHS	cWW
12	IL_8B0X_153	8B0X	0.1282	0	Double sheared with non-canonical cWW (H)	a	LSU rRNA	C	2470	C	2471	A	2472	A	2473	G	2474	*	C	2484	G	2485	A	2486	C	2487	G	2488	cWW	ncWB	ntSH	tHS	cWW
13	IL_4WF9_093	4WF9	0.0000	0	Double sheared with non-canonical cWW	X	LSU rRNA	C	2493	C	2494	A	2495	A	2496	G	2497	*	C	2507	G	2508	A	2509	C	2510	G	2511	cWW	cWB	tSH	ntHS	cWW
14	IL_9AXU_097	9AXU	0.1796	0		2	LSU rRNA	C	2930	C	2931	A	2932	A	2933	G	2934	*	C	2944	G	2945	A	2946	C	2947	G	2948	cWW		ntSH	ncWS	cWW
15	IL_4V9F_085	4V9F	0.1968	0	Double sheared with non-canonical cWW	0	LSU rRNA	G	2501	C	2502	A	2503	A	2504	G	2505	*	C	2515	G	2516	A	2517	C	2518	C	2519	cWW	cWB	ntSH	tHS	cWW
16	IL_8B0X_055	8B0X	0.3106	0	Double sheared with non-canonical cWW (H)	A	SSU rRNA	G	1272	C	1273	A	1274	A	1275	G	1276	*	C	1259	G	1260	A	1261	C	1262	C	1263	cWW	cWB	tSH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCAAG*CGACG	4
CCGAG*CGGCG	2
UCAAG*CGACA	2
GCAAG*CGACC	2
CUCAG*CAAGG	1
CUGAC*GGAUG	1
UCGAG*CGACA	1
GCAAG*CAACC	1
GCAAC*GAAAC	1
GUGAG*CGACC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAA*GAC	8
CGA*GGC	2
UCA*AAG	1
UGA*GAU	1
CGA*GAC	1
CAA*AAC	1
CAA*AAA	1
UGA*GAC	1

Release history

Release	4.0
Date	2025-08-13
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Double sheared with non-canonical cWW (7)
Double sheared with non-canonical cWW (H) (4)
(4)
Double sheared with near cWW (1)
Basepair signature: cWW-L-R-tSH-tHS-cWW
Heat map statistics: Min 0.08 | Avg 0.26 | Max 0.51

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Coloring options: Nucleotide numbers

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