Motif IL_92109.1 Version IL_92109.1 of this group appears in releases 1.1 to 1.4

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_1FJG_022	1FJG	0.7922	5		A	SSU rRNA	C	569	G	575	*	C	880	G	881	cWW	cWW
2	IL_2AW7_029	2AW7	0.7653	5		A	16S ribosomal RNA	C	569	G	575	*	C	880	G	881	cWW	cWW
3	IL_3U5F_033	3U5F	0.5845	5		6	18S rRNA	G	616	A	622	*	U	1104	C	1105	cWW	cWW
4	IL_2XZM_033	2XZM	0.6320	5		A	18S RRNA	G	610	A	616	*	U	1076	C	1077	cWW	cWW
5	IL_4IOA_024	4IOA	0.7415	1	Single bulged C (H)	X	LSU rRNA	G	938	G	940	*	C	863	C	864	cWW	cWW
6	IL_3U5H_031	3U5H	0.5003	1		5	25S rRNA	G	859	C	861	*	G	833	U	834	cWW	cWW
7	IL_3V2F_008	3V2F	0.5267	1		A	23S Ribosomal RNA	G	271\|\|\|M	C	271\|\|\|O	*	G	271\|\|\|I	C	271\|\|\|J	cWW	cWW
8	IL_3SNP_002	3SNP	0.5107	1		C	ferritin H IRE RNA	G	18	U	20	*	A	13	C	14	cWW	cWW
9	IL_2QBG_022	2QBG	0.4818	1		B	23S rRNA	G	763	C	765	*	G	697	C	698	cWW	cWW
10	IL_4A1B_113	4A1B	0.1350	2		1	26S RRNA	A	2928	G	2931	*	C	2869	U	2870	cWW	cWW
11	IL_3U5H_115	3U5H	0.1014	2		5	25S rRNA	A	2940	G	2943	*	C	2881	U	2882	cWW	cWW
12	IL_1S72_086	1S72	0.0000	2		0	LSU rRNA	G	2606	G	2609	*	C	2547	C	2548	cWW	cWW
13	IL_4IOA_092	4IOA	0.3822	2	Multiple bulged bases	X	LSU rRNA	C	2550	G	2553	*	C	2491	G	2492	cWW	cWW
14	IL_3V2F_095	3V2F	0.3645	2		A	23S Ribosomal RNA	C	2571	G	2574	*	C	2512	G	2513	cWW	cWW
15	IL_2QBG_097	2QBG	0.5363	2		B	23S rRNA	U	2571	G	2574	*	C	2512	A	2513	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGUAAAG*CG	2
GUUAAAA*UC	2
AACG*CU	2
CACG*CG	2
GCG*CC	1
GGC*GU	1
GUC*GC	1
GUU*AC	1
GAC*GC	1
GUCG*CC	1
UACG*CA	1

Non-Watson-Crick part of the motif

Sequence	Counts
AC*	5
GUAAA*	2
UUAAA*	2
U*	2
C*	1
G*	1
A*	1
UC*	1

Release history

Release	1.1	1.2	1.3	1.4
Date	2013-04-08	2013-05-04	2013-06-01	2013-07-01
Status	New id, 2 parents	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_92109.1	Only in the parent motif
IL_06429.3 Compare	IL_2QBG_097, IL_2QBG_022, IL_4A1B_113, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_3V2F_095	IL_2XZM_033, IL_3U5F_033, IL_1FJG_022, IL_2AW7_029, IL_4IOA_092, IL_4IOA_024	IL_387D_001, IL_1U9S_008, IL_3SN2_002, IL_1XOK_001, IL_2ZJR_091, IL_1XOK_002
IL_91487.1 Compare	IL_2AW7_029, IL_2XZM_033, IL_1FJG_022, IL_3U5F_033	IL_3V2F_095, IL_2QBG_097, IL_2QBG_022, IL_4A1B_113, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024	IL_2QBG_086, IL_2NZ4_007, IL_1S72_045, IL_3U5H_063, IL_2ZJR_024, IL_4A1B_063, IL_2QBG_060, IL_1S72_022, IL_3V2F_107, IL_1FJG_005, IL_3U5H_019, IL_4FAW_014, IL_3U5H_137, IL_1S72_099, IL_2AW7_005, IL_3V2F_059, IL_1S72_042

Children motifs

Child motif	Common motif instances	Only in IL_92109.1	Only in the child motif
IL_92109.2 Compare	IL_3V2F_095, IL_2QBG_097, IL_3U5F_033, IL_2QBG_022, IL_4A1B_113, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024	IL_2XZM_033, IL_1FJG_022	IL_4BPP_033, IL_3SN2_002
IL_35994.1 Compare	IL_1FJG_022	IL_2XZM_033, IL_3V2F_095, IL_2QBG_097, IL_3U5F_033, IL_2QBG_022, IL_4A1B_113, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024	IL_4IOA_094

Annotations: (13)
Single bulged C (H) (1)
Multiple bulged bases (1)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.08 | Avg 0.56 | Max 0.99

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