RNA 3D Hub //

Motif IL_92109.1 Version IL_92109.1 of this group appears in releases 1.1 to 1.4

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2break 3 41-42-3
1 IL_1FJG_0221FJG0.79225A SSU rRNAC569G575*C880G881cWWcWW
2 IL_2AW7_0292AW70.76535A SSU rRNAC569G575*C880G881cWWcWW
3 IL_3U5F_0333U5F0.584556 SSU rRNAG616A622*U1104C1105cWWcWW
4 IL_2XZM_0332XZM0.63205A SSU rRNAG610A616*U1076C1077cWWcWW
5 IL_4IOA_0244IOA0.74151Single bulged C (H)X LSU rRNAG938G940*C863C864cWWcWW
6 IL_3U5H_0313U5H0.500315 LSU rRNAG859C861*G833U834cWWcWW
7 IL_3V2F_0083V2F0.52671A LSU rRNAG271|||MC271|||O*G271|||IC271|||JcWWcWW
8 IL_3SNP_0023SNP0.51071C IREG18U20*A13C14cWWcWW
9 IL_2QBG_0222QBG0.48181B LSU rRNAG763C765*G697C698cWWcWW
10 IL_4A1B_1134A1B0.135021 LSU rRNAA2928G2931*C2869U2870cWWcWW
11 IL_3U5H_1153U5H0.101425 LSU rRNAA2940G2943*C2881U2882cWWcWW
12 IL_1S72_0861S720.000020 LSU rRNAG2606G2609*C2547C2548cWWcWW
13 IL_4IOA_0924IOA0.38222Multiple bulged basesX LSU rRNAC2550G2553*C2491G2492cWWcWW
14 IL_3V2F_0953V2F0.36452A LSU rRNAC2571G2574*C2512G2513cWWcWW
15 IL_2QBG_0972QBG0.53632B LSU rRNAU2571G2574*C2512A2513cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGUAAAG*CG2
GUUAAAA*UC2
AACG*CU2
CACG*CG2
GCG*CC1
GGC*GU1
GUC*GC1
GUU*AC1
GAC*GC1
GUCG*CC1
UACG*CA1
Non-Watson-Crick part of the motif
SequenceCounts
AC*5
GUAAA*2
UUAAA*2
U*2
C*1
G*1
A*1
UC*1
Annotations
  • (13)
  • Single bulged C (H) (1)
  • Multiple bulged bases (1)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.56 | Max 0.99
    Help

    Coloring options:

    IL_1FJG_022:IL_1FJG_022 = 0IL_1FJG_022:IL_2AW7_029 = 0.1021IL_1FJG_022:IL_3U5F_033 = 0.3478IL_1FJG_022:IL_2XZM_033 = 0.3976IL_1FJG_022:IL_4IOA_024 = 0.6463IL_1FJG_022:IL_3U5H_031 = 0.8963IL_1FJG_022:IL_3V2F_008 = 0.9718IL_1FJG_022:IL_3SNP_002 = 0.988IL_1FJG_022:IL_2QBG_022 = 0.9632IL_1FJG_022:IL_4A1B_113 = 0.8666IL_1FJG_022:IL_3U5H_115 = 0.8267IL_1FJG_022:IL_1S72_086 = 0.7922IL_1FJG_022:IL_4IOA_092 = 0.6641IL_1FJG_022:IL_3V2F_095 = 0.6897IL_1FJG_022:IL_2QBG_097 = 0.7005IL_2AW7_029:IL_1FJG_022 = 0.1021IL_2AW7_029:IL_2AW7_029 = 0IL_2AW7_029:IL_3U5F_033 = 0.3391IL_2AW7_029:IL_2XZM_033 = 0.3644IL_2AW7_029:IL_4IOA_024 = 0.6126IL_2AW7_029:IL_3U5H_031 = 0.8802IL_2AW7_029:IL_3V2F_008 = 0.9468IL_2AW7_029:IL_3SNP_002 = 0.9603IL_2AW7_029:IL_2QBG_022 = 0.9318IL_2AW7_029:IL_4A1B_113 = 0.836IL_2AW7_029:IL_3U5H_115 = 0.7989IL_2AW7_029:IL_1S72_086 = 0.7653IL_2AW7_029:IL_4IOA_092 = 0.6562IL_2AW7_029:IL_3V2F_095 = 0.686IL_2AW7_029:IL_2QBG_097 = 0.7106IL_3U5F_033:IL_1FJG_022 = 0.3478IL_3U5F_033:IL_2AW7_029 = 0.3391IL_3U5F_033:IL_3U5F_033 = 0IL_3U5F_033:IL_2XZM_033 = 0.1869IL_3U5F_033:IL_4IOA_024 = 0.4631IL_3U5F_033:IL_3U5H_031 = 0.5733IL_3U5F_033:IL_3V2F_008 = 0.6786IL_3U5F_033:IL_3SNP_002 = 0.6951IL_3U5F_033:IL_2QBG_022 = 0.6729IL_3U5F_033:IL_4A1B_113 = 0.6626IL_3U5F_033:IL_3U5H_115 = 0.6236IL_3U5F_033:IL_1S72_086 = 0.5845IL_3U5F_033:IL_4IOA_092 = 0.5901IL_3U5F_033:IL_3V2F_095 = 0.5868IL_3U5F_033:IL_2QBG_097 = 0.6171IL_2XZM_033:IL_1FJG_022 = 0.3976IL_2XZM_033:IL_2AW7_029 = 0.3644IL_2XZM_033:IL_3U5F_033 = 0.1869IL_2XZM_033:IL_2XZM_033 = 0IL_2XZM_033:IL_4IOA_024 = 0.3456IL_2XZM_033:IL_3U5H_031 = 0.5986IL_2XZM_033:IL_3V2F_008 = 0.654IL_2XZM_033:IL_3SNP_002 = 0.6711IL_2XZM_033:IL_2QBG_022 = 0.6499IL_2XZM_033:IL_4A1B_113 = 0.6915IL_2XZM_033:IL_3U5H_115 = 0.6544IL_2XZM_033:IL_1S72_086 = 0.632IL_2XZM_033:IL_4IOA_092 = 0.6886IL_2XZM_033:IL_3V2F_095 = 0.6907IL_2XZM_033:IL_2QBG_097 = 0.7472IL_4IOA_024:IL_1FJG_022 = 0.6463IL_4IOA_024:IL_2AW7_029 = 0.6126IL_4IOA_024:IL_3U5F_033 = 0.4631IL_4IOA_024:IL_2XZM_033 = 0.3456IL_4IOA_024:IL_4IOA_024 = 0IL_4IOA_024:IL_3U5H_031 = 0.5804IL_4IOA_024:IL_3V2F_008 = 0.5472IL_4IOA_024:IL_3SNP_002 = 0.5785IL_4IOA_024:IL_2QBG_022 = 0.5602IL_4IOA_024:IL_4A1B_113 = 0.7755IL_4IOA_024:IL_3U5H_115 = 0.7366IL_4IOA_024:IL_1S72_086 = 0.7415IL_4IOA_024:IL_4IOA_092 = 0.9004IL_4IOA_024:IL_3V2F_095 = 0.8988IL_4IOA_024:IL_2QBG_097 = 0.9928IL_3U5H_031:IL_1FJG_022 = 0.8963IL_3U5H_031:IL_2AW7_029 = 0.8802IL_3U5H_031:IL_3U5F_033 = 0.5733IL_3U5H_031:IL_2XZM_033 = 0.5986IL_3U5H_031:IL_4IOA_024 = 0.5804IL_3U5H_031:IL_3U5H_031 = 0IL_3U5H_031:IL_3V2F_008 = 0.2773IL_3U5H_031:IL_3SNP_002 = 0.3044IL_3U5H_031:IL_2QBG_022 = 0.2949IL_3U5H_031:IL_4A1B_113 = 0.521IL_3U5H_031:IL_3U5H_115 = 0.5039IL_3U5H_031:IL_1S72_086 = 0.5003IL_3U5H_031:IL_4IOA_092 = 0.7552IL_3U5H_031:IL_3V2F_095 = 0.7147IL_3U5H_031:IL_2QBG_097 = 0.7954IL_3V2F_008:IL_1FJG_022 = 0.9718IL_3V2F_008:IL_2AW7_029 = 0.9468IL_3V2F_008:IL_3U5F_033 = 0.6786IL_3V2F_008:IL_2XZM_033 = 0.654IL_3V2F_008:IL_4IOA_024 = 0.5472IL_3V2F_008:IL_3U5H_031 = 0.2773IL_3V2F_008:IL_3V2F_008 = 0IL_3V2F_008:IL_3SNP_002 = 0.0975IL_3V2F_008:IL_2QBG_022 = 0.1231IL_3V2F_008:IL_4A1B_113 = 0.5232IL_3V2F_008:IL_3U5H_115 = 0.5042IL_3V2F_008:IL_1S72_086 = 0.5267IL_3V2F_008:IL_4IOA_092 = 0.8413IL_3V2F_008:IL_3V2F_095 = 0.8193IL_3V2F_008:IL_2QBG_097 = 0.9463IL_3SNP_002:IL_1FJG_022 = 0.988IL_3SNP_002:IL_2AW7_029 = 0.9603IL_3SNP_002:IL_3U5F_033 = 0.6951IL_3SNP_002:IL_2XZM_033 = 0.6711IL_3SNP_002:IL_4IOA_024 = 0.5785IL_3SNP_002:IL_3U5H_031 = 0.3044IL_3SNP_002:IL_3V2F_008 = 0.0975IL_3SNP_002:IL_3SNP_002 = 0IL_3SNP_002:IL_2QBG_022 = 0.0828IL_3SNP_002:IL_4A1B_113 = 0.5042IL_3SNP_002:IL_3U5H_115 = 0.4879IL_3SNP_002:IL_1S72_086 = 0.5107IL_3SNP_002:IL_4IOA_092 = 0.8277IL_3SNP_002:IL_3V2F_095 = 0.8042IL_3SNP_002:IL_2QBG_097 = 0.9388IL_2QBG_022:IL_1FJG_022 = 0.9632IL_2QBG_022:IL_2AW7_029 = 0.9318IL_2QBG_022:IL_3U5F_033 = 0.6729IL_2QBG_022:IL_2XZM_033 = 0.6499IL_2QBG_022:IL_4IOA_024 = 0.5602IL_2QBG_022:IL_3U5H_031 = 0.2949IL_2QBG_022:IL_3V2F_008 = 0.1231IL_2QBG_022:IL_3SNP_002 = 0.0828IL_2QBG_022:IL_2QBG_022 = 0IL_2QBG_022:IL_4A1B_113 = 0.4713IL_2QBG_022:IL_3U5H_115 = 0.4563IL_2QBG_022:IL_1S72_086 = 0.4818IL_2QBG_022:IL_4IOA_092 = 0.8006IL_2QBG_022:IL_3V2F_095 = 0.7786IL_2QBG_022:IL_2QBG_097 = 0.9163IL_4A1B_113:IL_1FJG_022 = 0.8666IL_4A1B_113:IL_2AW7_029 = 0.836IL_4A1B_113:IL_3U5F_033 = 0.6626IL_4A1B_113:IL_2XZM_033 = 0.6915IL_4A1B_113:IL_4IOA_024 = 0.7755IL_4A1B_113:IL_3U5H_031 = 0.521IL_4A1B_113:IL_3V2F_008 = 0.5232IL_4A1B_113:IL_3SNP_002 = 0.5042IL_4A1B_113:IL_2QBG_022 = 0.4713IL_4A1B_113:IL_4A1B_113 = 0IL_4A1B_113:IL_3U5H_115 = 0.0835IL_4A1B_113:IL_1S72_086 = 0.135IL_4A1B_113:IL_4IOA_092 = 0.4553IL_4A1B_113:IL_3V2F_095 = 0.4421IL_4A1B_113:IL_2QBG_097 = 0.6166IL_3U5H_115:IL_1FJG_022 = 0.8267IL_3U5H_115:IL_2AW7_029 = 0.7989IL_3U5H_115:IL_3U5F_033 = 0.6236IL_3U5H_115:IL_2XZM_033 = 0.6544IL_3U5H_115:IL_4IOA_024 = 0.7366IL_3U5H_115:IL_3U5H_031 = 0.5039IL_3U5H_115:IL_3V2F_008 = 0.5042IL_3U5H_115:IL_3SNP_002 = 0.4879IL_3U5H_115:IL_2QBG_022 = 0.4563IL_3U5H_115:IL_4A1B_113 = 0.0835IL_3U5H_115:IL_3U5H_115 = 0IL_3U5H_115:IL_1S72_086 = 0.1014IL_3U5H_115:IL_4IOA_092 = 0.4285IL_3U5H_115:IL_3V2F_095 = 0.4172IL_3U5H_115:IL_2QBG_097 = 0.5957IL_1S72_086:IL_1FJG_022 = 0.7922IL_1S72_086:IL_2AW7_029 = 0.7653IL_1S72_086:IL_3U5F_033 = 0.5845IL_1S72_086:IL_2XZM_033 = 0.632IL_1S72_086:IL_4IOA_024 = 0.7415IL_1S72_086:IL_3U5H_031 = 0.5003IL_1S72_086:IL_3V2F_008 = 0.5267IL_1S72_086:IL_3SNP_002 = 0.5107IL_1S72_086:IL_2QBG_022 = 0.4818IL_1S72_086:IL_4A1B_113 = 0.135IL_1S72_086:IL_3U5H_115 = 0.1014IL_1S72_086:IL_1S72_086 = 0IL_1S72_086:IL_4IOA_092 = 0.3822IL_1S72_086:IL_3V2F_095 = 0.3645IL_1S72_086:IL_2QBG_097 = 0.5363IL_4IOA_092:IL_1FJG_022 = 0.6641IL_4IOA_092:IL_2AW7_029 = 0.6562IL_4IOA_092:IL_3U5F_033 = 0.5901IL_4IOA_092:IL_2XZM_033 = 0.6886IL_4IOA_092:IL_4IOA_024 = 0.9004IL_4IOA_092:IL_3U5H_031 = 0.7552IL_4IOA_092:IL_3V2F_008 = 0.8413IL_4IOA_092:IL_3SNP_002 = 0.8277IL_4IOA_092:IL_2QBG_022 = 0.8006IL_4IOA_092:IL_4A1B_113 = 0.4553IL_4IOA_092:IL_3U5H_115 = 0.4285IL_4IOA_092:IL_1S72_086 = 0.3822IL_4IOA_092:IL_4IOA_092 = 0IL_4IOA_092:IL_3V2F_095 = 0.1197IL_4IOA_092:IL_2QBG_097 = 0.2512IL_3V2F_095:IL_1FJG_022 = 0.6897IL_3V2F_095:IL_2AW7_029 = 0.686IL_3V2F_095:IL_3U5F_033 = 0.5868IL_3V2F_095:IL_2XZM_033 = 0.6907IL_3V2F_095:IL_4IOA_024 = 0.8988IL_3V2F_095:IL_3U5H_031 = 0.7147IL_3V2F_095:IL_3V2F_008 = 0.8193IL_3V2F_095:IL_3SNP_002 = 0.8042IL_3V2F_095:IL_2QBG_022 = 0.7786IL_3V2F_095:IL_4A1B_113 = 0.4421IL_3V2F_095:IL_3U5H_115 = 0.4172IL_3V2F_095:IL_1S72_086 = 0.3645IL_3V2F_095:IL_4IOA_092 = 0.1197IL_3V2F_095:IL_3V2F_095 = 0IL_3V2F_095:IL_2QBG_097 = 0.2258IL_2QBG_097:IL_1FJG_022 = 0.7005IL_2QBG_097:IL_2AW7_029 = 0.7106IL_2QBG_097:IL_3U5F_033 = 0.6171IL_2QBG_097:IL_2XZM_033 = 0.7472IL_2QBG_097:IL_4IOA_024 = 0.9928IL_2QBG_097:IL_3U5H_031 = 0.7954IL_2QBG_097:IL_3V2F_008 = 0.9463IL_2QBG_097:IL_3SNP_002 = 0.9388IL_2QBG_097:IL_2QBG_022 = 0.9163IL_2QBG_097:IL_4A1B_113 = 0.6166IL_2QBG_097:IL_3U5H_115 = 0.5957IL_2QBG_097:IL_1S72_086 = 0.5363IL_2QBG_097:IL_4IOA_092 = 0.2512IL_2QBG_097:IL_3V2F_095 = 0.2258IL_2QBG_097:IL_2QBG_097 = 0IL_1FJG_022IL_2AW7_029IL_3U5F_033IL_2XZM_033IL_4IOA_024IL_3U5H_031IL_3V2F_008IL_3SNP_002IL_2QBG_022IL_4A1B_113IL_3U5H_115IL_1S72_086IL_4IOA_092IL_3V2F_095IL_2QBG_097Discrepancy0.000.200.400.600.80
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