#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_3V2F_1073V2F0.23901B5S Ribosomal RNAC17G18*C65G67cWWcWW
2 IL_1S72_0991S720.17341Major groove intercalation (H)9 5S rRNAC15G16*C64G66cWWcWW
3 IL_1S72_0221S720.09822Multiple bulged bases (H)0 LSU rRNAC726G727*C699G702cWWcWW
4 IL_2QBG_0602QBG0.00001B23S rRNAC1499G1500*C1489G1491cWWcWW
5 IL_2AW7_0052AW70.09132A16S ribosomal RNAU103G104*C63A66cWWcWW
6 IL_1FJG_0051FJG0.11202Multiple bulged bases (H)A SSU rRNAC103G104*C63G66cWWcWW
7 IL_2NZ4_0072NZ40.15311R+GGlmS ribozymeC52G53*C5G7cWWcWW
8 IL_3U5H_1373U5H0.23931525S rRNAC3324G3325*U3381G3383cWWcWW
9 IL_3V2F_0593V2F0.25681A23S Ribosomal RNAC1499G1500*U1489G1491cWWcWW
10 IL_2QBG_0862QBG0.30051B23S rRNAU2220G2221*U2202G2204cWWcWW
11 IL_4A1B_0634A1B0.27611126S RRNAU1437A1438*U1424G1426cWWcWW
12 IL_1S72_0421S720.23131Single bulged G (H)0 LSU rRNAC1225G1226*U1136G1138cWWcWW
13 IL_2AW7_0292AW70.36415A16S ribosomal RNAC880G881*C569G575cWWcWW
14 IL_1FJG_0221FJG0.34815A SSU rRNAC880G881*C569G575cWWcWW
15 IL_3U5H_0193U5H0.54761525S rRNAU512G513*C577G579cWWcWW
16 IL_3U5F_0333U5F0.54645618S rRNAU1104C1105*G616A622cWWcWW
17 IL_2XZM_0332XZM0.52415A18S RRNAU1076C1077*G610A616cWWcWW
18 IL_2ZJR_0242ZJR0.69261X LSU rRNAC863C864*G938G940cWWcWW
19 IL_1S72_0451S720.81592Bulged stacked bases (H)0 LSU rRNAG1269U1270*A1286C1289cWWcWW
20 IL_4FAW_0144FAW0.79552AGroup II catalytic intron D1-D4-3U365A366*U375G378cWWcWW
21 IL_3U5H_0633U5H0.81871525S rRNAC1420G1421*C1385G1387cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CG*CAG5
CG*CGUAAAG2
UC*GUUAAAA2
CG*CAUG1
UG*CGAA1
CG*CGUG1
CG*UUG1
CG*UAG1
UG*UUG1
UA*UUG1
CG*UGG1
UG*CAG1
CC*GCG1
GU*AAUC1
UA*UACG1
Non-Watson-Crick part of the motif
SequenceCounts
*A7
*U3
*AU2
*GUAAA2
*UUAAA2
*GA1
*GU1
*G1
*C1
*AC1

Release history

Release1.0
Date2013-03-04
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_91487.1Only in the parent motif
IL_32390.2
Compare
IL_2QBG_086, IL_2NZ4_007, IL_2XZM_033, IL_1S72_042, IL_2ZJR_024, IL_1FJG_005, IL_2QBG_060, IL_3U5F_033, IL_1FJG_022, IL_1S72_022, IL_4A1B_063, IL_2AW7_029, IL_3U5H_019, IL_3U5H_137, IL_1S72_099, IL_2AW7_005, IL_3V2F_059, IL_3V2F_107IL_4FAW_014, IL_1S72_045, IL_3U5H_063IL_2OZB_001, IL_2XZM_066, IL_3U5H_046
IL_89088.1
Compare
IL_1S72_045, IL_3U5H_063IL_2QBG_086, IL_2NZ4_007, IL_2XZM_033, IL_1S72_042, IL_2ZJR_024, IL_1FJG_005, IL_2QBG_060, IL_3U5F_033, IL_1FJG_022, IL_1S72_022, IL_4A1B_063, IL_2AW7_029, IL_3V2F_107, IL_1S72_099, IL_3U5H_137, IL_4FAW_014, IL_2AW7_005, IL_3V2F_059, IL_3U5H_019IL_1KXK_003, IL_1KXK_001, IL_4A1B_032, IL_2QBG_032
IL_06429.2
Compare
IL_4FAW_014IL_2QBG_086, IL_2NZ4_007, IL_1S72_045, IL_2XZM_033, IL_1S72_042, IL_3U5H_063, IL_1FJG_005, IL_2QBG_060, IL_3U5F_033, IL_1FJG_022, IL_1S72_022, IL_2ZJR_024, IL_4A1B_063, IL_2AW7_029, IL_3V2F_107, IL_3U5H_137, IL_1S72_099, IL_2AW7_005, IL_3V2F_059, IL_3U5H_019IL_387D_001, IL_3V2F_095, IL_2QBG_097, IL_3SN2_002, IL_2QBG_022, IL_1U9S_008, IL_1XOK_001, IL_4A1B_113, IL_2ZJR_091, IL_1XOK_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_3V2F_008

Children motifs

Child motifCommon motif instancesOnly in IL_91487.1Only in the child motif
IL_28947.1
Compare
IL_2QBG_086, IL_2NZ4_007, IL_1S72_042, IL_3U5H_063, IL_4A1B_063, IL_2QBG_060, IL_1S72_022, IL_1FJG_005, IL_3U5H_019, IL_4FAW_014, IL_3U5H_137, IL_1S72_099, IL_2AW7_005, IL_3V2F_059, IL_3V2F_107IL_1S72_045, IL_2XZM_033, IL_2ZJR_024, IL_3U5F_033, IL_1FJG_022, IL_2AW7_029IL_3V2F_069, IL_387D_001, IL_4IOA_067, IL_1U9S_008, IL_1XOK_001, IL_1XOK_002
IL_92109.1
Compare
IL_2AW7_029, IL_2XZM_033, IL_1FJG_022, IL_3U5F_033IL_2QBG_086, IL_2NZ4_007, IL_1S72_045, IL_3U5H_063, IL_2ZJR_024, IL_4A1B_063, IL_2QBG_060, IL_1S72_022, IL_3V2F_107, IL_1FJG_005, IL_3U5H_019, IL_4FAW_014, IL_3U5H_137, IL_1S72_099, IL_2AW7_005, IL_3V2F_059, IL_1S72_042IL_3V2F_095, IL_2QBG_097, IL_2QBG_022, IL_4A1B_113, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024
IL_97217.6
Compare
IL_1S72_045IL_2QBG_086, IL_2NZ4_007, IL_2XZM_033, IL_3U5H_063, IL_2ZJR_024, IL_4A1B_063, IL_2QBG_060, IL_3U5F_033, IL_1FJG_022, IL_1S72_022, IL_3V2F_107, IL_1FJG_005, IL_2AW7_029, IL_3U5H_019, IL_4FAW_014, IL_3U5H_137, IL_1S72_099, IL_2AW7_005, IL_3V2F_059, IL_1S72_042IL_4IOA_002, IL_1GID_009, IL_3SN2_001, IL_4ANG_001, IL_2AW7_051, IL_4IOA_075, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3DIR_001, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_2C50_001, IL_2XZM_030, IL_3D2V_001, IL_1S72_040, IL_4A1B_044, IL_3Q1Q_004, IL_2AW7_026, IL_3TZR_002, IL_4A1B_124, IL_2PN4_003, IL_1CSL_002, IL_2QBG_099, IL_4FAW_004, IL_3V2F_056, IL_3U5F_058, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_1ET4_002, IL_3U5H_077, IL_4A1B_131, IL_1S72_030, IL_1S72_096, IL_2XZM_009, IL_3V2F_045, IL_3B31_001, IL_2XXA_010, IL_3U5H_025, IL_2XXA_012, IL_1S72_002, IL_4IOA_071, IL_2NOK_006, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_4IOA_057, IL_3U5H_026, IL_2QBG_089, IL_2XZM_074, IL_3SNP_001, IL_3V2F_104, IL_4IOA_031, IL_1FJG_040, IL_2XZM_013, IL_4A1B_076, IL_3U5H_003, IL_1S72_064, IL_1S72_067, IL_4A1B_072, IL_1S72_088, IL_2PLY_002, IL_1S72_104, IL_1U9S_006, IL_6MSF_001, IL_3U5F_026, IL_1U9S_003, IL_3U5F_024, IL_3GX5_001, IL_3IWN_004, IL_3IWN_003, IL_3U5H_089, IL_2OIU_003, IL_3U5H_065, IL_2OIU_001, IL_2QBG_069, IL_2QBG_007, IL_3V2F_077, IL_3V2F_073, IL_2AW7_008, IL_2C4Z_001, IL_2XZM_068, IL_3U5H_014, IL_2PJP_001, IL_2XZM_065, IL_2AW7_001, IL_1S72_070, IL_2AW7_002, IL_3U5H_119, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_2QBG_023, IL_2QBG_076, IL_3U5H_094, IL_1JZV_002, IL_3OWZ_001, IL_3U5H_092, IL_3U5H_093, IL_3SUX_001, IL_1R3E_001, IL_3U5H_098, IL_4IOA_101, IL_2BQ5_001, IL_2XZM_023, IL_4A1C_003, IL_4A1C_002, IL_2BU1_001, IL_3R2D_001, IL_1DUQ_002, IL_1MJI_001, IL_2AW7_017, IL_4A1B_011, IL_4A1B_010, IL_3U5H_142, IL_3U5H_143, IL_3U5H_140, IL_2AW7_019, IL_4IOA_034, IL_1S72_074, IL_3UCZ_002, IL_2QBG_107, IL_3W3S_001, IL_3W3S_002, IL_2QBG_104, IL_3U5F_009, IL_1FJG_001, IL_3D0U_005, IL_3DHS_003, IL_3U5F_001, IL_3D0U_001, IL_3SD3_002, IL_2IZN_001, IL_3U5H_013, IL_2A64_003, IL_2A64_002, IL_2IZM_001, IL_1MFQ_005, IL_1U63_002, IL_1X8W_001, IL_2QBG_035, IL_3V2F_019, IL_3U5H_034, IL_1FJG_014, IL_3U5H_030, IL_4A1B_123, IL_3U5H_136, IL_4A1B_121, IL_3V2F_066, IL_3DIR_005, IL_3U5H_131, IL_3U5H_039, IL_3U5F_016, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_2XZM_024, IL_1S72_014, IL_4B5R_001, IL_1R3E_002, IL_1FJG_007, IL_3IVK_003, IL_4A1B_095, IL_2IZ9_001, IL_4A1B_091, IL_2ZY6_002, IL_4A1B_039, IL_2QBG_070, IL_1ET4_004, IL_4A1B_031, IL_4A1B_036, IL_2XZM_056, IL_2XZM_057, IL_4IOA_011, IL_4IOA_016, IL_3U5H_129, IL_1FJG_002, IL_4IOA_015, IL_397D_001, IL_3U5H_125, IL_1S72_077, IL_3V2F_020, IL_3OWZ_005, IL_1FJG_043, IL_4FRG_002, IL_3MEI_001, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_3U5H_002, IL_3P49_003, IL_4A1B_088, IL_1GID_012, IL_2XZM_021, IL_4A1B_084, IL_3V2F_002, IL_1U9S_001, IL_2AW7_048, IL_1DQH_001, IL_3U5F_066, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_4A1B_023, IL_1FJG_036, IL_3V2F_033, IL_4IOA_064, IL_4A1B_105, IL_2QUX_002, IL_3V2F_035, IL_3UCZ_003, IL_2VPL_002, IL_3V2F_038, IL_1GID_002, IL_4A1B_101, IL_4A1B_100, IL_3U5H_050, IL_1FUF_002, IL_1FUF_003, IL_3U5H_055, IL_1FJG_016, IL_3U5H_058, IL_2XZM_029, IL_4A1B_006, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_4AOB_001, IL_3DHS_002, IL_1NBS_005, IL_1JZV_005
Annotations
  • (16)
  • Multiple bulged bases (H) (2)
  • Single bulged G (H) (1)
  • Bulged stacked bases (H) (1)
  • Major groove intercalation (H) (1)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.48 | Max 0.98
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