Motif IL_98756.1 Version IL_98756.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-17 | 3-16 | 4-15 | 6-13 | 7-12 | 8-11 | 9-10 | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2ZJR_106 | 2ZJR | 0.1670 | 0 | Bacterial 5S Loop E (H) | Y | 5S rRNA | G | 100 | A | 101 | A | 102 | A | 103 | A | 104 | G | 105 | U | 106 | C | 107 | G | 108 | * | C | 73 | A | 74 | A | 75 | U | 76 | G | 77 | A | 78 | U | 79 | A | 80 | C | 81 | cWW | tSH | tHW | ncBW | tWH | tWH | tHS | cWW |
2 | IL_1DFU_001 | 1DFU | 0.0000 | 0 | Bacterial 5S Loop E | M+N | 5S RRNA | C | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | * | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | G | 79 | cWW | tSH | tHW | cBW | cWB | tWH | tHS | cWW |
3 | IL_1FEU_001 | 1FEU | 0.0937 | 0 | Bacterial 5S Loop E | C+B | 21 NT FRAGMENT OF 5S RRNA | C | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | * | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | G | 79 | cWW | tSH | tHW | cBW | ncWB | tWH | tHS | cWW |
4 | IL_1FEU_002 | 1FEU | 0.1243 | 0 | F+E | 21 NT FRAGMENT OF 5S RRNA | C | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | * | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | G | 79 | cWW | tSH | tHW | cBW | cWB | tWH | tHS | cWW | |
5 | IL_3F1H_112 | 3F1H | 0.2082 | 0 | B | 5S RRNA | G | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | * | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | C | 79 | cWW | tSH | tHW | cBW | cWB | tWH | tHS | cWW | |
6 | IL_364D_003 | 364D | 0.1972 | 0 | Bacterial 5S Loop E | C+B | RNA (31-mer) | C | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | * | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | G | 79 | cWW | tSH | ntHW | cBW | ntWH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAGAGUAG*CGAUGGUAG | 4 |
GAAAAGUCG*CAAUGAUAC | 1 |
CGAUGGUAC*GGAGAGUAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAGAGUA*GAUGGUA | 4 |
AAAAGUC*AAUGAUA | 1 |
GAUGGUA*GAGAGUA | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_98756.1 | Only in the child motif |
---|---|---|---|
IL_96804.1 Compare | IL_1DFU_001, IL_1FEU_002, IL_1FEU_001 | IL_3F1H_112, IL_364D_003, IL_2ZJR_106 | IL_3PYO_102, IL_2QBG_005 |
IL_16614.1 Compare | IL_364D_003, IL_2ZJR_106 | IL_3F1H_112, IL_1DFU_001, IL_1FEU_002, IL_1FEU_001 |
- Annotations
-
- Bacterial 5S Loop E (3)
- (2)
- Bacterial 5S Loop E (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.09 | Avg 0.16 | Max 0.27
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