#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8 9break 10 11 12 13 14 15 16 17 181-182-173-164-156-137-128-119-10
1 IL_2ZJR_1062ZJR0.16700Bacterial 5S Loop E (H)Y 5S rRNAG100A101A102A103A104G105U106C107G108*C73A74A75U76G77A78U79A80C81cWWtSHtHWncBWtWHtWHtHScWW
2 IL_1DFU_0011DFU0.00000Bacterial 5S Loop EM+N5S RRNAC97G98A99G100A101G102U103A104G105*C71G72A73U74G75G76U77A78G79cWWtSHtHWcBWcWBtWHtHScWW
3 IL_1FEU_0011FEU0.09370Bacterial 5S Loop EC+B21 NT FRAGMENT OF 5S RRNAC97G98A99G100A101G102U103A104G105*C71G72A73U74G75G76U77A78G79cWWtSHtHWcBWncWBtWHtHScWW
4 IL_1FEU_0021FEU0.12430F+E21 NT FRAGMENT OF 5S RRNAC97G98A99G100A101G102U103A104G105*C71G72A73U74G75G76U77A78G79cWWtSHtHWcBWcWBtWHtHScWW
5 IL_3F1H_1123F1H0.20820B5S RRNAG97G98A99G100A101G102U103A104G105*C71G72A73U74G75G76U77A78C79cWWtSHtHWcBWcWBtWHtHScWW
6 IL_364D_003364D0.19720Bacterial 5S Loop EC+BRNA (31-mer)C97G98A99G100A101G102U103A104G105*C71G72A73U74G75G76U77A78G79cWWtSHntHWcBWntWHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAGAGUAG*CGAUGGUAG4
GAAAAGUCG*CAAUGAUAC1
CGAUGGUAC*GGAGAGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAGAGUA*GAUGGUA4
AAAAGUC*AAUGAUA1
GAUGGUA*GAGAGUA1

Release history

Release0.10.20.30.4
Date2011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_98756.1Only in the child motif
IL_96804.1
Compare
IL_1DFU_001, IL_1FEU_002, IL_1FEU_001IL_3F1H_112, IL_364D_003, IL_2ZJR_106IL_3PYO_102, IL_2QBG_005
IL_16614.1
Compare
IL_364D_003, IL_2ZJR_106IL_3F1H_112, IL_1DFU_001, IL_1FEU_002, IL_1FEU_001
Annotations
  • Bacterial 5S Loop E (3)
  • (2)
  • Bacterial 5S Loop E (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.09 | Avg 0.16 | Max 0.27
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