Motif IL_97217.5 Version IL_97217.5 of this group appears in releases 1.0 to 1.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3	2-4	3-4
1	IL_3IVK_003	3IVK	0.5083	1		C	class I ligase product	A	112	C	113	*	G	46	U	48	cWW	ncWW
2	IL_3U5F_058	3U5F	0.4355	1		6	18S rRNA	G	1146	A	1147	*	U	1630	C	1632	cWW	cWW
3	IL_1FJG_035	1FJG	0.4487	1	Single bulged A (H)	A	SSU rRNA	G	922	A	923	*	U	1393	C	1395	cWW	cWW
4	IL_2XZM_056	2XZM	0.5078	1		A	18S RRNA	G	1119	A	1120	*	U	1602	C	1604	cWW	ncWW
5	IL_2XXA_010	2XXA	0.4195	1		G	SSRP RNA	G	17	C	18	*	G	82	C	84	cWW	cWW	ncWw
6	IL_1GID_012	1GID	0.4776	1	Single bulged U	B	P4-P6 RNA RIBOZYME DOMAIN	A	192	C	193	*	G	129	U	131	cWW	cWW
7	IL_3U5F_026	3U5F	0.3899	1		6	18S rRNA	A	481	U	482	*	A	505	U	507	cWW	cWW
8	IL_1S72_002	1S72	0.3651	1	Single bulged A (H)	0	LSU rRNA	G	33	C	34	*	G	448	C	450	cWW	cWW
9	IL_2XZM_023	2XZM	0.3233	1		A	18S RRNA	U	439	C	440	*	G	450	A	452	cWW	cWW
10	IL_3U5H_129	3U5H	0.2886	1		5	25S rRNA	A	3210	C	3211	*	G	3177	U	3179	cWW	cWW
11	IL_3U5H_013	3U5H	0.3517	1		5	25S rRNA	A	204	C	205	*	G	189	U	191	cWW	cWW
12	IL_4A1B_011	4A1B	0.3144	1		1	26S RRNA	A	204	C	205	*	G	189	U	191	cWW	cWW
13	IL_1NBS_001	1NBS	0.3262	1	Single bulged A (H)	A	RNase P class B	G	113	C	114	*	G	129	C	131	cWW	cWW
14	IL_2PJP_001	2PJP	0.3582	1	Single bulged U	B	SECIS RNA	A	29	C	30	*	G	16	U	18	cWW	cWW
15	IL_1U9S_001	1U9S	0.3949	1	Single bulged A	A	RIBONUCLEASE P	G	95	C	96	*	G	107	C	109	cWW	cWW
16	IL_4A1B_044	4A1B	0.4106	1		1	26S RRNA	A	1126	U	1127	*	A	1009	U	1011	cWW	cWW
17	IL_2A64_002	2A64	0.4051	1	Single bulged U	A	ribonuclease P RNA	G	395	C	396	*	G	51	C	53	cWW	cWW
18	IL_3U5F_016	3U5F	0.3545	1		6	18S rRNA	A	288	U	289	*	A	265	U	267	cWW	cWW
19	IL_3U5H_039	3U5H	0.4491	1		5	25S rRNA	A	1099	U	1100	*	A	983	U	985	cWW	cWW
20	IL_3U5H_105	3U5H	0.5417	1		5	25S rRNA	A	2740	C	2741	*	G	2714	U	2716	cWW	cWW
21	IL_2XXA_012	2XXA	0.4847	1		G	SSRP RNA	A	26	C	27	*	G	71	U	73	cWW	cWW
22	IL_3V2F_066	3V2F	0.4454	1		A	23S Ribosomal RNA	G	1770	C	1771	*	G	1980	C	1982	cWW	cWW
23	IL_3V2F_045	3V2F	0.4317	1		A	23S Ribosomal RNA	G	1229	C	1230	*	G	1219	C	1221	cWW	cWW
24	IL_3R2D_001	3R2D	0.5502	2	Multiple bulged bases	S+R	RNA (12-mer)	G	10	C	11	*	G	2	C	5	cWW	cWW
25	IL_2XZM_029	2XZM	0.4732	1		A	18S RRNA	G	580	C	581	*	G	550	C	552	cWW	cWW
26	IL_2VPL_002	2VPL	0.1885	1	Single bulged A	B	FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE	U	16	C	17	*	G	28	A	30	cWW	cWW
27	IL_1FJG_014	1FJG	0.1963	1	Single bulged U (H)	A	SSU rRNA	G	392	A	393	*	U	367	C	369	cWW	cWW
28	IL_2QBG_007	2QBG	0.1896	1		B	23S rRNA	G	36	C	37	*	G	442	C	444	cWW	cWW
29	IL_1GID_002	1GID	0.1635	1		A	P4-P6 RNA RIBOZYME DOMAIN	G	110	G	111	*	C	209	C	211	cWW	cWW
30	IL_1GID_009	1GID	0.2038	1	Single bulged A	B	P4-P6 RNA RIBOZYME DOMAIN	G	110	G	111	*	C	209	C	211	cWW	cWW
31	IL_3V2F_002	3V2F	0.2837	1		A	23S Ribosomal RNA	G	36	C	37	*	G	442	C	444	cWW	cWW
32	IL_2ZJR_002	2ZJR	0.2507	1	Single bulged A (H)	X	LSU rRNA	G	36	C	37	*	G	454	C	456	cWW	cWW
33	IL_3U5H_026	3U5H	0.2122	1		5	25S rRNA	A	755	U	756	*	A	775	U	777	cWW	cWW
34	IL_3DHS_002	3DHS	0.2285	1		A	RNase P RNA	G	395	C	396	*	G	51	C	53	cWW	cWW
35	IL_2ZJR_056	2ZJR	0.2513	1	Single bulged C (H)	X	LSU rRNA	A	1534	C	1535	*	G	1488	U	1490	cWW	cWW
36	IL_1NBS_005	1NBS	0.2803	1	Single bulged A	B	RNase P class B	G	113	C	114	*	G	129	C	131	cWW	cWW
37	IL_2XZM_074	2XZM	0.2742	1		A	18S RRNA	U	1322	C	1323	*	G	1343	A	1345	cWW	cWW
38	IL_3OWZ_005	3OWZ	0.2914	1		B	Domain II of glycine riboswitch	U	27	C	28	*	G	12	A	14	cWW	cWW
39	IL_3U5H_131	3U5H	0.2600	1		5	25S rRNA	C	3193	C	3194	*	G	3197	G	3199	cWW	cWW
40	IL_2QBG_076	2QBG	0.2699	2		B	23S rRNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
41	IL_3V2F_073	3V2F	0.3152	2		A	23S Ribosomal RNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
42	IL_2ZJR_072	2ZJR	0.3043	2	Bulged stacked bases (H)	X	LSU rRNA	G	1916	C	1917	*	G	1947	C	1950	cWW	cWW
43	IL_2OIU_001	2OIU	0.3254	1		P	L1 Ribozyme RNA Ligase	A	41	C	42	*	G	18	U	20	cWW	cWW
44	IL_1S72_014	1S72	0.3253	1	Single bulged U (H)	0	LSU rRNA	G	322	C	323	*	G	307	C	309	cWW	cWW
45	IL_3U5F_031	3U5F	0.3850	1		6	18S rRNA	G	586	C	587	*	G	557	C	559	cWW	cWW
46	IL_3U5H_089	3U5H	0.3163	1		5	25S rRNA	C	2128	U	2129	*	G	2323	G	2325	cWW	cWW
47	IL_3U5F_059	3U5F	0.3205	1		6	18S rRNA	U	1627	U	1628	*	G	1149	A	1151	cWW	cWW
48	IL_3U5H_014	3U5H	0.4336	1		8+5	5.8S rRNA	G	25	U	26	*	G	337	C	339	cWW	cWW
49	IL_1FJG_002	1FJG	0.4893	1	Single bulged A (H)	A	SSU rRNA	G	44	U	45	*	G	396	C	398	cWW	cWW
50	IL_2ZJR_011	2ZJR	0.3688	1	Single bulged A (H)	X	LSU rRNA	G	678	C	679	*	G	600	C	602	cWW	cWW
51	IL_4A1C_002	4A1C	0.4200	1		2	5.8S RRNA	G	71	C	72	*	G	90	C	92	cWW	cWW
52	IL_1DUQ_002	1DUQ	0.3634	1	Single bulged A	A+B	THE REV BINDING ELEMENT	G	108	C	109	*	G	120	C	122	cWW	cWW
53	IL_1CSL_002	1CSL	0.3897	1	Single bulged A	A+B	RNA (13-mer) + RNA (15-mer)	G	50	C	51	*	G	67	C	69	cWW	cWW
54	IL_2OIU_003	2OIU	0.3675	1	Single bulged U	Q	L1 Ribozyme RNA Ligase	A	41	C	42	*	G	18	U	20	cWW	cWW
55	IL_3W3S_001	3W3S	0.3956	1	Single bulged C	B	Selenocysteine transfer RNA	G	23	C	24	*	G	11	C	12	cWW	cWW
56	IL_3SNP_001	3SNP	0.4360	1		C	ferritin H IRE RNA	A	24	C	25	*	G	7	U	9	cWW	cWW
57	IL_3U5H_152	3U5H	0.4492	1		8	5.8S rRNA	G	68	U	69	*	A	89	C	91	cWW	cWW
58	IL_4A1B_100	4A1B	0.4014	1		1	26S RRNA	A	2557	U	2558	*	A	2561	U	2563	cWW	cWW
59	IL_2ZJR_065	2ZJR	0.5368	1	Single bulged A (H)	X	LSU rRNA	G	1761	C	1762	*	G	1963	U	1965	cWW	cWW
60	IL_2QBG_070	2QBG	0.4760	1		B	23S rRNA	G	1770	C	1771	*	G	1980	U	1982	cWW	cWW
61	IL_4A1B_101	4A1B	0.4353	1		1	26S RRNA	G	2603	U	2604	*	A	2614	U	2616	cWW	cWW
62	IL_4A1B_091	4A1B	0.3491	2		1	26S RRNA	G	2271	C	2272	*	G	2302	U	2305	cWW	cWW
63	IL_3U5H_094	3U5H	0.4630	2		5	25S rRNA	G	2276	C	2277	*	G	2307	U	2310	cWW	cWW
64	IL_1S72_070	1S72	0.4659	2		0	LSU rRNA	G	1974	C	1975	*	G	2005	U	2008	cWW	cWW
65	IL_3SD3_002	3SD3	0.5092	1		A	Tetrahydrofolate riboswitch	G	17	C	18	*	G	67	U	69	cWW	cWW
66	IL_3SUX_001	3SUX	0.4977	1	Single bulged G	X	THF riboswitch	G	20	C	21	*	G	76	U	78	cWW	cWW
67	IL_2QBG_023	2QBG	0.4254	1		B	23S rRNA	U	702	U	703	*	G	728	A	730	cWW	cWW
68	IL_2ZJR_016	2ZJR	0.4613	1	Single bulged G (H)	X	LSU rRNA	U	715	U	716	*	G	741	A	743	cWW	cWW
69	IL_3V2F_020	3V2F	0.5550	1		A	23S Ribosomal RNA	G	702	U	703	*	G	728	C	730	cWW	cWW
70	IL_1S72_027	1S72	0.4801	1	Single bulged G (H)	0	LSU rRNA	A	793	U	794	*	A	819	U	821	cWW	cWW
71	IL_3P49_003	3P49	0.4898	1		A	Glycine riboswitch	A	30	C	31	*	G	13	U	15	cWW	cWW
72	IL_1S72_026	1S72	0.5800	1		0	LSU rRNA	A	788	C	789	*	G	856	U	858	cWW	cWW
73	IL_3U5H_030	3U5H	0.5722	1		5	25S rRNA	A	828	U	829	*	A	895	U	897	cWW	cWW
74	IL_3V2F_038	3V2F	0.5500	1		A	23S Ribosomal RNA	G	1149	C	1150	*	G	1011	C	1013	cWW	cWW
75	IL_2QBG_038	2QBG	0.5736	1		B	23S rRNA	G	1149	C	1150	*	G	1011	C	1013	cWW	cWW
76	IL_3U5H_136	3U5H	0.5266	1		5	25S rRNA	U	3387	C	3388	*	G	3318	A	3320	cWW	cWW
77	IL_4A1B_036	4A1B	0.5911	1		1	26S RRNA	A	853	U	854	*	A	920	U	922	cWW	cWW
78	IL_3U5F_018	3U5F	0.5340	1		6	18S rRNA	C	275	C	276	*	G	279	G	281	cWW	cWW
79	IL_3V2F_056	3V2F	0.4813	1		A	23S Ribosomal RNA	C	1450\|\|\|A	C	1451	*	G	1459	G	1461	cWW	cWW
80	IL_2ZJR_015	2ZJR	0.4472	1		X	LSU rRNA	C	710	C	711	*	G	776	G	778	cWW	cWW
81	IL_3V2F_019	3V2F	0.3889	1		A	23S Ribosomal RNA	C	697	C	698	*	G	763	G	765	cWW	cWW
82	IL_3OWZ_001	3OWZ	0.3979	1		A	Domain II of glycine riboswitch	U	27	C	28	*	G	12	A	14	cWW	cWW
83	IL_2QBG_069	2QBG	0.3635	1		B	23S rRNA	C	1727	C	1728	*	G	1731	G	1733	cWW	cWW
84	IL_3U5H_055	3U5H	0.4325	1		5	25S rRNA	U	1324	U	1325	*	A	1180	A	1182	cWW	cWW
85	IL_2ZJR_034	2ZJR	0.4264	1		X	LSU rRNA	C	1160	U	1161	*	A	1022	G	1024	cWW	cWW
86	IL_4A1B_124	4A1B	0.3378	1		1	26S RRNA	U	3179	C	3180	*	G	3158	A	3160	cWW	cWW
87	IL_4A1B_095	4A1B	0.2541	1		1	26S RRNA	A	2799	C	2800	*	G	2404	U	2406	cWW	cWW
88	IL_1S72_030	1S72	0.2408	1	Single bulged U (H)	0	LSU rRNA	C	847	C	848	*	G	834	G	836	cWW	cWW
89	IL_3U5H_098	3U5H	0.2504	1		5	25S rRNA	A	2811	C	2812	*	G	2409	U	2411	cWW	cWW
90	IL_3U5H_142	3U5H	0.3290	2		5	25S rRNA	C	3349	C	3350	*	G	3353	G	3356	cWW	cWW
91	IL_3U5H_003	3U5H	0.3063	1		8+5	5.8S rRNA	G	144	U	145	*	A	13	C	15	cWW	cWW
92	IL_3U5H_125	3U5H	0.4637	2		5	25S rRNA	C	3063	U	3064	*	A	3077	G	3080	cWW	cWW
93	IL_397D_001	397D	0.3569	3	Multiple bulged bases	B+A	RNA (12-mer)	C	39	U	40	*	A	22	G	26	cWW	cWW
94	IL_1S03_005	1S03	0.3132	1	Single bulged U	B	47-MER	C	41	U	42	*	A	6	G	8	cWW	cWW
95	IL_1S72_040	1S72	0.3235	1		0	LSU rRNA	C	1253	C	1254	*	G	1108	G	1110	cWW	cWW
96	IL_3D0U_001	3D0U	0.3531	1	Single bulged C	A	Lysine Riboswitch RNA	C	75	C	76	*	G	9	G	11	cWW	cWW
97	IL_3DIR_001	3DIR	0.3792	1		A	RNA (174-MER)	C	78	C	79	*	G	12	G	14	cWW	cWW
98	IL_4A1B_123	4A1B	0.4572	1		1	26S RRNA	U	3247	C	3248	*	G	3144	G	3146	cWW	cWW
99	IL_2NOK_006	2NOK	0.4500	1		C+D	RNA (24-mer) + RNA (20-mer)	U	61	C	62	*	G	105	G	107	cWW	cWW
100	IL_2NOK_003	2NOK	0.3492	1		A+B	RNA (24-mer) + RNA (20-mer)	U	61	C	62	*	G	105	G	107	cWW	cWW
101	IL_4A1B_121	4A1B	0.5270	2		1	26S RRNA	U	3052	U	3053	*	A	3066	G	3069	cWW	cWW
102	IL_2QBG_104	2QBG	0.5028	2		B	23S rRNA	U	2695	U	2696	*	A	2711	G	2714	cWW	cWW
103	IL_2AW7_051	2AW7	0.3921	1		A	16S ribosomal RNA	U	1060	G	1061	*	C	1195	A	1197	cWW	cWW
104	IL_3U5H_034	3U5H	0.3482	1		5	25S rRNA	C	886	G	887	*	C	873	G	875	cWW	cWW
105	IL_4A1B_039	4A1B	0.3723	1		1	26S RRNA	C	911	G	912	*	C	898	G	900	cWW	cWW
106	IL_1FJG_043	1FJG	0.3679	1		A	SSU rRNA	C	1060	G	1061	*	C	1195	G	1197	cWW	cWW
107	IL_1MFQ_005	1MFQ	0.3844	1	Single bulged A	A	SRP RNA	C	220	C	221	*	G	175	G	177	cWW	cWW
108	IL_1X8W_001	1X8W	0.5069	1		A	Tetrahymena ribozyme RNA	G	110	G	111	*	C	209	C	211	cWW	cWW
109	IL_4A1B_076	4A1B	0.2504	1		1	26S RRNA	C	1733	A	1734	*	U	1758	G	1760	cWW	ncWW
110	IL_2XZM_068	2XZM	0.3150	1		A	18S RRNA	C	1252	G	1253	*	C	1397	G	1399	cWW	cWW
111	IL_3U5H_025	3U5H	0.2374	1		5	25S rRNA	C	752	C	753	*	G	779	G	781	cWW	cWW
112	IL_4A1B_031	4A1B	0.2511	1		1	26S RRNA	C	776	C	777	*	G	804	G	806	cWW	cWW
113	IL_3TZR_002	3TZR	0.2407	1	Single bulged U	A+B	RNA (20-mer) + RNA (16-mer)	U	61	C	62	*	G	105	G	107	cWW	cWW
114	IL_4ANG_001	4ANG	0.2838	1		R	RNA (20-mer)	C	15\|\|A\|\|P_1	U	16\|\|A\|\|P_1	*	A	5\|\|A\|\|P_1	G	7\|\|A\|\|P_1	cWW	cWW
115	IL_2XZM_030	2XZM	0.1463	1		A	18S RRNA	A	579	G	580	*	C	552	U	554	cWW	cWW
116	IL_1R3E_001	1R3E	0.1915	3	Multiple bulged bases	E+D	RNA (17-mer)	C	415	C	416	*	G	408	G	412	cWW	cWW
117	IL_2PLY_002	2PLY	0.1651	1		E	RNA (23-mer)	C	21	G	22	*	C	25	G	27	cWW	cWW
118	IL_3SN2_001	3SN2	0.1555	1	Single bulged C	B	transferrin receptor iron regulatory element B RNA	C	24	A	25	*	U	7	G	9	cWW	cWW
119	IL_1S03_006	1S03	0.1122	1	Single bulged C	B	47-MER	C	39	C	40	*	G	9	G	11	cWW	cWW
120	IL_1I9X_002	1I9X	0.1311	1	Single bulged A	A+B	RNA (13-mer)	U	9	A	10	*	U	4	A	6	cWW	cWW
121	IL_1I9X_001	1I9X	0.1812	1	Single bulged A	B+A	RNA (13-mer)	U	9	A	10	*	U	4	A	6	cWW	cWW
122	IL_2AW7_017	2AW7	0.1844	1		A	16S ribosomal RNA	C	392	A	393	*	U	367	G	369	cWW	cWW
123	IL_3U5H_140	3U5H	0.1703	1		5	25S rRNA	U	3363	C	3364	*	G	3340	A	3342	cWW	cWW
124	IL_3U5F_056	3U5F	0.2140	1		6	18S rRNA	C	1066	C	1067	*	G	1051	G	1053	cWW	cWW
125	IL_2IZ9_001	2IZ9	0.2192	1		R	RNA (18-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
126	IL_2C50_001	2C50	0.1826	1		R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
127	IL_2IZM_001	2IZM	0.1633	1		R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
128	IL_2BU1_001	2BU1	0.1985	1		R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
129	IL_2C4Z_001	2C4Z	0.2355	1		R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
130	IL_2BQ5_001	2BQ5	0.1996	1		R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
131	IL_4FRG_002	4FRG	0.2244	1	Single bulged U	B	cobalamin riboswitch aptamer domain	C	39	C	40	*	G	23	G	25	cWW	cWW
132	IL_2ZJR_076	2ZJR	0.2633	1	Single bulged U (H)	X	LSU rRNA	C	2421	C	2422	*	G	2050	G	2052	cWW	cWW
133	IL_1S72_074	1S72	0.2677	1	Single bulged U (H)	0	LSU rRNA	C	2477	U	2478	*	A	2108	G	2110	cWW	cWW
134	IL_2QBG_080	2QBG	0.2784	1		B	23S rRNA	C	2442	C	2443	*	G	2067	G	2069	cWW	cWW
135	IL_3V2F_077	3V2F	0.2536	1		A	23S Ribosomal RNA	C	2442	C	2443	*	G	2067	G	2069	cWW	cWW
136	IL_4A1B_010	4A1B	0.2898	2		1	26S RRNA	C	177	U	178	*	A	240	G	243	cWW	cWW
137	IL_4A1C_003	4A1C	0.2497	1		3	5S RRNA	U	15	A	16	*	U	62	A	64	cWW	cWW
138	IL_6MSF_001	6MSF	0.2727	1	Single bulged A	R	RNA (14-mer)	G	12\|\|\|\|P_1	G	13\|\|\|\|P_1	*	C	2\|\|\|\|P_1	C	4\|\|\|\|P_1	cWW	cWW
139	IL_2IZN_001	2IZN	0.2031	1	Single bulged G	R	RNA (19-mer)	G	14\|\|\|\|P_1	G	15\|\|\|\|P_1	*	C	5\|\|\|\|P_1	C	7\|\|\|\|P_1	cWW	cWW
140	IL_3U5F_001	3U5F	0.1873	1		6	18S rRNA	U	600	A	601	*	U	24	A	26	cWW	cWW
141	IL_2XZM_013	2XZM	0.1893	1		A	18S RRNA	C	192	C	193	*	G	181	G	183	cWW	cWW
142	IL_1FJG_036	1FJG	0.2586	1	Single bulged G (H)	A	SSU rRNA	U	1390	U	1391	*	G	925	G	927	cWW	cWW
143	IL_2AW7_043	2AW7	0.2638	1		A	16S ribosomal RNA	U	1390	U	1391	*	G	925	G	927	cWW	cWW
144	IL_4A1B_056	4A1B	0.2354	1		1	26S RRNA	U	1351	U	1352	*	A	1207	G	1209	cWW	cWW
145	IL_3U5H_143	3U5H	0.2093	1		7	5S rRNA	C	15	U	16	*	A	63	G	65	cWW	cWW
146	IL_3D2V_001	3D2V	0.1570	1	Single bulged U	A	TPP riboswitch (THI element)	C	5	C	6	*	G	73	G	75	cWW	cWW
147	IL_1R3E_002	1R3E	0.1631	3	Multiple bulged bases	D+E	RNA (17-mer)	C	415	C	416	*	G	408	G	412	cWW	cWW
148	IL_3U5H_077	3U5H	0.1818	1		5	25S rRNA	C	1669	C	1670	*	G	1778	G	1780	cWW	cWW
149	IL_4A1B_084	4A1B	0.2230	1		1	26S RRNA	C	2124	C	2125	*	G	2318	G	2320	cWW	cWW
150	IL_1U63_002	1U63	0.1784	1		B	49 NT FRAGMENT OF MRNA FOR L1	U	16	C	17	*	G	28	A	30	cWW	cWW
151	IL_2XZM_057	2XZM	0.2273	1		A	18S RRNA	U	1599	U	1600	*	G	1122	A	1124	cWW	ncWW
152	IL_2PN4_003	2PN4	0.2451	1		A+B	RNA (24-mer) + RNA (20-mer)	U	61	C	62	*	G	105	G	107	cWW	cWW
153	IL_3U5H_002	3U5H	0.2284	1		5+8	25S rRNA + 5.8S rRNA	C	7	C	8	*	G	150	G	152	cWW	cWW
154	IL_3W3S_002	3W3S	0.1819	1	Single bulged U	B	Selenocysteine transfer RNA	C	26	C	27	*	G	43	G	44	cWW	cWW
155	IL_2A64_003	2A64	0.1780	1	Single bulged U	A	ribonuclease P RNA	C	77	C	78	*	G	66	G	68	cWW	cWW
156	IL_3DHS_003	3DHS	0.2230	1		A	RNase P RNA	C	77	C	78	*	G	66	G	68	cWW	cWW
157	IL_4A1B_131	4A1B	0.1607	1		1	26S RRNA	C	3320	U	3321	*	A	3297	G	3299	cWW	cWW
158	IL_4A1B_072	4A1B	0.3152	1		1	26S RRNA	U	1693	C	1694	*	G	1804	G	1806	cWW	cWW
159	IL_2ZY6_002	2ZY6	0.2025	1	Single bulged U	A	phenylalanyl transfer RNA	C	24	C	25	*	G	10	G	12	cWW	cWW
160	IL_4A1B_059	4A1B	0.2108	1		1	26S RRNA	C	1323	C	1324	*	G	1234	G	1236	cWW	cWW
161	IL_3U5H_058	3U5H	0.2047	1		5	25S rRNA	C	1296	C	1297	*	G	1207	G	1209	cWW	cWW
162	IL_4B5R_001	4B5R	0.1507	1	Single bulged A (H)	A	SAM-I riboswitch	C	40	C	41	*	G	13	G	15	cWW	cWW
163	IL_1FJG_040	1FJG	0.1280	1	Single bulged U (H)	A	SSU rRNA	C	1208	C	1209	*	G	1048	G	1050	cWW	cWW
164	IL_3U5F_066	3U5F	0.1749	1		6	18S rRNA	C	1440	C	1441	*	G	1268	G	1270	cWW	cWW
165	IL_2XZM_065	2XZM	0.1521	1		A	18S RRNA	C	1411	C	1412	*	G	1240	G	1242	cWW	cWW
166	IL_2AW7_048	2AW7	0.1360	1		A	16S ribosomal RNA	C	1208	C	1209	*	G	1048	G	1050	cWW	cWW
167	IL_3GX5_001	3GX5	0.1379	1		A	RNA (94-MER)	C	40	C	41	*	G	13	G	15	cWW	cWW
168	IL_1S72_104	1S72	0.1425	1	Single bulged U (H)	9	5S rRNA	C	95	C	96	*	G	86	G	88	cWW	cWW
169	IL_4AOB_001	4AOB	0.1904	1	Single bulged A	A	SAM-I riboswitch	C	40	C	41	*	G	13	G	15	cWW	cWW
170	IL_1JZV_005	1JZV	0.1996	1		C+D	RNA (8-mer) + RNA (9-mer)	G	24	A	25	*	U	32	C	34	cWW	cWW
171	IL_1JZV_002	1JZV	0.1882	1	Single bulged A	A+B	RNA (8-mer) + RNA (9-mer)	G	4	A	5	*	U	12	C	14	cWW	cWW
172	IL_1S72_077	1S72	0.1464	1	Single bulged A (H)	0	LSU rRNA	G	2279	A	2280	*	U	2290	C	2292	cWW	cWW
173	IL_3U5H_103	3U5H	0.1875	1		5	25S rRNA	G	2614	G	2615	*	C	2625	C	2627	cWW	cWW
174	IL_1DQH_001	1DQH	0.0794	1	Single bulged C	A+B	RNA (9-mer) + RNA (10-mer)	C	3	A	4	*	U	15	G	17	cWW	cWW
175	IL_2AW7_001	2AW7	0.0000	1		A	16S ribosomal RNA	U	552	A	553	*	U	30	A	32	cWW	cWW
176	IL_3U5F_024	3U5F	0.0914	1		6	18S rRNA	U	463	A	464	*	U	439	A	441	cWW	cWW
177	IL_1FJG_001	1FJG	0.1164	1	Single bulged G (H)	A	SSU rRNA	U	552	A	553	*	U	30	A	32	cWW	cWW
178	IL_2XZM_021	2XZM	0.1913	1		A	18S RRNA	C	455	A	456	*	U	431	G	433	cWW	cWW
179	IL_1F7Y_002	1F7Y	0.2235	1		B	16S RIBOSOMAL RNA FRAGMENT	G	21	G	22	*	C	46	C	48	cWW	cWW
180	IL_2AW7_002	2AW7	0.2222	1		A	16S ribosomal RNA	A	44	G	45	*	C	396	U	398	cWW	cWW
181	IL_2AW7_008	2AW7	0.3082	1		A	16S ribosomal RNA	G	75	G	76	*	U	93	C	95	cWW	cWW
182	IL_1S72_096	1S72	0.3891	1	Single bulged A (H)	0	LSU rRNA	G	2860	G	2861	*	C	2895	C	2897	cWW	cWW
183	IL_3Q1Q_004	3Q1Q	0.2992	2		B	RNase P RNA	G	108	G	109	*	C	205	C	208	cWW	cWW
184	IL_2AW7_026	2AW7	0.2426	1		A	16S ribosomal RNA	C	470	U	471	*	A	460	G	462	cWW	cWW
185	IL_1MJI_001	1MJI	0.3916	2		C	5S rRNA fragment	C	30	C	31	*	G	51	G	54	cWW	cWW
186	IL_1ET4_002	1ET4	0.3521	1	Major groove intercalation	A	RNA APTAMER, 35-MER	C	218	C	219	*	G	226	G	228	cWW	cWW
187	IL_1ET4_004	1ET4	0.3664	1		B	RNA APTAMER, 35-MER	C	318	C	319	*	G	326	G	328	cWW	cWW
188	IL_3U5F_009	3U5F	0.3443	2		6	18S rRNA	A	300	A	301	*	U	113	U	116	cWW	cWW
189	IL_2AW7_042	2AW7	0.3448	1		A	16S ribosomal RNA	G	922	A	923	*	U	1393	C	1395	cWW	cWW
190	IL_2XZM_024	2XZM	0.2958	1		A	18S RRNA	A	473	G	474	*	C	498	U	500	cWW	cWW
191	IL_3U5H_050	3U5H	0.4336	1		5	25S rRNA	G	1083	A	1084	*	U	1074	C	1076	cWW	cWW
192	IL_4A1B_051	4A1B	0.4131	2		1	26S RRNA	G	1111	A	1112	*	U	1101	C	1104	cWW	cWW
193	IL_4FAW_004	4FAW	0.4042	1		A	Group II catalytic intron D1-D4-3	A	99	A	100	*	U	82	U	84	cWW	cWW
194	IL_1GID_005	1GID	0.4073	1		A	P4-P6 RNA RIBOZYME DOMAIN	A	192	C	193	*	G	129	U	131	cWW	cWW
195	IL_3UCZ_002	3UCZ	0.5054	1		R	RNA (92-MER)	G	86	G	87	*	C	52	C	54	cWW	cWW
196	IL_1U9S_006	1U9S	0.5682	1	Major groove intercalation	A	RIBONUCLEASE P	G	140	G	141	*	U	158	C	160	cWW	ncWW
197	IL_3IWN_003	3IWN	0.5492	1	Major groove intercalation	A	C-di-GMP riboswitch	G	81	G	82	*	C	42	C	44	cWW	cWW
198	IL_2QBG_107	2QBG	0.5257	1		B	23S rRNA	G	2838	G	2839	*	U	2878	C	2880	cWW	cWW
199	IL_3V2F_104	3V2F	0.4634	1		A	23S Ribosomal RNA	G	2838	G	2839	*	U	2878	C	2880	cWW	cWW
200	IL_3DIR_005	3DIR	0.4218	1		A	RNA (174-MER)	G	84	G	85	*	U	109	C	111	cWW	cWW
201	IL_4A1B_023	4A1B	0.4182	1		1	26S RRNA	G	493	G	494	*	U	484	C	486	cWW	cWW
202	IL_2AW7_019	2AW7	0.3439	1		A	16S ribosomal RNA	U	375	G	376	*	U	387	A	389	cWW	cWW
203	IL_1FJG_016	1FJG	0.2979	1		A	SSU rRNA	U	375	G	376	*	U	387	A	389	cWW	cWW
204	IL_3UCZ_003	3UCZ	0.3517	2		R	RNA (92-MER)	G	56	G	57	*	U	81	C	84	cWW	cWW
205	IL_1FUF_003	1FUF	0.4032	2	Multiple bulged bases	A+B	RNA (14-mer)	G	9	G	10	*	U	19	C	22	cWW	cWW
206	IL_1FUF_002	1FUF	0.3952	2	Multiple bulged bases	B+A	RNA (14-mer)	G	23	G	24	*	U	5	C	8	cWW	cWW
207	IL_3V2F_033	3V2F	0.3656	1		A	23S Ribosomal RNA	G	880	G	881	*	U	895	C	897	cWW	cWW
208	IL_2QBG_089	2QBG	0.3774	1		B	23S rRNA	G	2414	G	2415	*	U	2401	C	2403	cWW	cWW
209	IL_1S72_010	1S72	0.3848	1	Single bulged G (H)	0	LSU rRNA	G	274	G	275	*	U	374	C	376	cWW	cWW
210	IL_3IWN_004	3IWN	0.3816	2	Multiple bulged bases	A	C-di-GMP riboswitch	G	46	G	47	*	U	76	C	79	cWW	cWW
211	IL_2ZJR_068	2ZJR	0.3626	2	Major groove intercalation (H)	X	LSU rRNA	U	1833	G	1834	*	U	1881	A	1884	cWW	cWW
212	IL_2QBG_073	2QBG	0.4393	2		B	23S rRNA	U	1841	G	1842	*	U	1898	A	1901	cWW	cWW
213	IL_3U5H_092	3U5H	0.4338	2		5	25S rRNA	U	2200	G	2201	*	U	2241	A	2244	cWW	cWW
214	IL_3D0U_005	3D0U	0.4628	1	Single bulged G	A	Lysine Riboswitch RNA	C	81	G	82	*	U	106	G	108	ncWW	cWW
215	IL_1S72_067	1S72	0.4479	2	Major groove intercalation (H)	0	LSU rRNA	U	1897	G	1898	*	U	1939	A	1942	cWW	cWW
216	IL_3U5H_065	3U5H	0.4440	1		5	25S rRNA	C	1411	G	1412	*	U	1398	G	1400	cWW	cWW
217	IL_1FJG_007	1FJG	0.3377	2	Minor groove platform (H)	A	SSU rRNA	G	231	G	232	*	U	129	C	131	cWW	cWW
218	IL_4A1B_006	4A1B	0.3529	1		1	26S RRNA	G	158	G	159	*	U	260	C	262	cWW	cWW
219	IL_2XZM_009	2XZM	0.3451	2		A	18S RRNA	A	291	G	292	*	U	109	U	112	cWW	cWW
220	IL_2QBG_099	2QBG	0.2055	1		B	23S rRNA	C	2591	G	2592	*	C	2601	G	2603	cWW	cWW
221	IL_2ZJR_093	2ZJR	0.1985	1		X	LSU rRNA	C	2570	G	2571	*	C	2580	G	2582	cWW	cWW
222	IL_3U5H_119	3U5H	0.2133	1		5	25S rRNA	C	2960	G	2961	*	C	2970	G	2972	cWW	cWW
223	IL_4A1B_116	4A1B	0.1751	1		1	26S RRNA	C	2948	G	2949	*	C	2958	G	2960	cWW	cWW
224	IL_1S72_088	1S72	0.1874	1		0	LSU rRNA	C	2626	G	2627	*	C	2636	G	2638	cWW	cWW
225	IL_3MEI_001	3MEI	0.2085	1	Single bulged U	A+B	RNA (23-mer)	C	7	G	8	*	C	15	G	17	cWW	cWW
226	IL_1S72_064	1S72	0.2516	1	Single bulged A (H)	0	LSU rRNA	C	1826	G	1827	*	C	2021	G	2023	cWW	cWW
227	IL_3B31_001	3B31	0.2673	1	Single bulged A	A	RNA (29-MER)	C	6194	G	6195	*	C	6181	G	6183	cWW	cWW
228	IL_2QUX_002	2QUX	0.2856	1	Single bulged A	F	RNA (25-MER)	C	20	G	21	*	C	5	G	7	cWW	cWW
229	IL_3U5F_069	3U5F	0.2706	1		6	18S rRNA	C	1280	G	1281	*	C	1426	G	1428	cWW	cWW
230	IL_2ZJR_031	2ZJR	0.2551	1	Single bulged C (H)	X	LSU rRNA	U	1170	A	1171	*	U	1005	A	1007	cWW	ncWW		ncWH
231	IL_3V2F_035	3V2F	0.2579	1		A	23S Ribosomal RNA	U	1159	G	1160	*	C	994	A	996	cWW	cWW
232	IL_4A1B_088	4A1B	0.3063	1		1	26S RRNA	C	2232	G	2233	*	C	2199	G	2201	cWW	cWW
233	IL_2QBG_035	2QBG	0.2646	1		B	23S rRNA	U	1159	G	1160	*	C	994	A	996	cWW	cWW
234	IL_1U9S_003	1U9S	0.3012	2	Major groove intercalation	A	RIBONUCLEASE P	U	116	G	117	*	C	224	A	227	cWW	cWW
235	IL_4A1B_050	4A1B	0.2986	1		1	26S RRNA	U	1117	C	1118	*	G	1094	G	1096	cWW	cWW
236	IL_3U5H_093	3U5H	0.4158	1		5	25S rRNA	C	2237	G	2238	*	C	2204	G	2206	cWW	cWW
237	IL_1NBS_002	1NBS	0.3737	2	Major groove intercalation (H)	A	RNase P class B	U	181	G	182	*	U	228	A	231	cWW	cWW
238	IL_1NBS_009	1NBS	0.3950	2	Major groove intercalation	B	RNase P class B	U	181	G	182	*	U	228	A	231	cWW	cWW
239	IL_4A1B_105	4A1B	0.3767	1		1	26S RRNA	A	2774	G	2775	*	C	2760	U	2762	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GUG	24
CC*GAG	15
GC*GAC	12
CG*CAG	10
AC*GUU	9
GA*UAC	8
GC*GUC	8
CC*GCG	7
CG*CUG	7
UC*GAA	5
GG*CAC	5
UC*GUG	5
AC*GCU	4
AU*AAU	4
AC*GAU	4
UU*GGA	4
CU*AUG	4
GG*UGC	4
UG*UAAA	4
AU*AGU	3
UC*GUA	3
GC*GCAC	3
GC*GCAU	3
CA*UCG	3
CU*AAG	3
AG*CAU	3
UA*UAA	3
GG*UAC	3
GC*GCC	2
AU*AUU	2
GU*GAC	2
GU*AUC	2
GC*GAU	2
GC*GGU	2
GG*CGC	2
CC*GUUCG	2
CA*UUG	2
UA*UCA	2
UU*GGG	2
UC*GCG	2
UA*UGA	2
GG*CUC	2
UG*UGA	2
GG*UAGC	2
GG*UUUC	2
GG*UUC	2
UG*CCA	2
UC*GGA	1
GC*GCUC	1
GA*UUC	1
CU*GAG	1
GU*AAU	1
GU*GGC	1
UU*AUA	1
CC*GUUG	1
CU*AUUG	1
CU*AUCUG	1
UU*AAUG	1
UU*ACUG	1
UG*CAA	1
CU*AAGG	1
UU*AUG	1
UA*UUA	1
GG*CCC	1
GG*CAAC	1
CC*GAAG	1
AA*UCGU	1
GA*UUAC	1
AA*UGU	1
GG*UCC	1
UG*UGAA	1
CG*UGG	1
UG*UCAA	1
CG*UAG	1
GG*UGAC	1
AG*UAGU	1
UG*CAAA	1
AG*CUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	83
*U	75
*G	25
*C	24
*CA	7
*AA	7
*UU	4
*AG	4
*CU	2
*UUC	2
*GA	2
*UCU	1
*AU	1
*CG	1
*UA	1

Release history

Release	1.0
Date	2013-03-04
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_97217.5	Only in the parent motif
IL_97217.4 Compare	IL_1GID_009, IL_2ZJR_011, IL_3SN2_001, IL_2ZJR_016, IL_2ZJR_015, IL_2AW7_051, IL_3U5F_026, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3DIR_001, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_2C50_001, IL_2XZM_030, IL_3D2V_001, IL_1S72_040, IL_4A1B_044, IL_3Q1Q_004, IL_2AW7_026, IL_3TZR_002, IL_2ZJR_068, IL_4A1B_124, IL_2PN4_003, IL_1CSL_002, IL_2QBG_099, IL_2ZJR_002, IL_4FAW_004, IL_3V2F_056, IL_3U5F_058, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_1ET4_002, IL_3U5H_077, IL_4A1B_131, IL_1S72_030, IL_1S72_096, IL_2XZM_009, IL_3V2F_045, IL_2ZJR_093, IL_3B31_001, IL_2XXA_010, IL_3U5H_025, IL_2XXA_012, IL_1S72_002, IL_4AOB_001, IL_2NOK_006, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_2ZJR_034, IL_3U5H_026, IL_2ZJR_031, IL_2QBG_089, IL_2XZM_074, IL_3SNP_001, IL_3V2F_104, IL_3U5H_143, IL_1FJG_040, IL_2XZM_013, IL_4A1B_076, IL_3U5H_003, IL_1S72_064, IL_1S72_067, IL_4A1B_072, IL_1S72_088, IL_2PLY_002, IL_1S72_104, IL_1U9S_006, IL_6MSF_001, IL_1U9S_003, IL_3U5F_024, IL_3GX5_001, IL_3IWN_004, IL_3IWN_003, IL_3U5H_089, IL_2OIU_003, IL_3U5H_065, IL_2OIU_001, IL_3V2F_077, IL_3V2F_073, IL_2AW7_008, IL_2C4Z_001, IL_2XZM_068, IL_3U5H_014, IL_2PJP_001, IL_2XZM_065, IL_2AW7_001, IL_1S72_070, IL_2AW7_002, IL_3U5H_119, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_2QBG_023, IL_2QBG_076, IL_3OWZ_005, IL_3OWZ_001, IL_3U5H_092, IL_3U5H_093, IL_3SUX_001, IL_1R3E_001, IL_3U5H_098, IL_2ZJR_056, IL_2BQ5_001, IL_2XZM_023, IL_4A1C_003, IL_4A1C_002, IL_2BU1_001, IL_3R2D_001, IL_1DUQ_002, IL_1MJI_001, IL_2AW7_017, IL_4A1B_011, IL_4A1B_010, IL_3U5H_142, IL_3V2F_002, IL_3U5H_140, IL_2AW7_019, IL_1JZV_005, IL_1S72_074, IL_3UCZ_002, IL_2QBG_107, IL_2QBG_069, IL_2QBG_104, IL_3U5F_009, IL_1FJG_001, IL_3D0U_005, IL_3DHS_003, IL_3U5F_001, IL_3D0U_001, IL_3SD3_002, IL_2IZN_001, IL_3U5H_013, IL_2A64_003, IL_2A64_002, IL_2IZM_001, IL_1MFQ_005, IL_1U63_002, IL_1X8W_001, IL_2QBG_035, IL_3V2F_019, IL_3U5H_034, IL_1FJG_014, IL_3U5H_030, IL_4A1B_123, IL_3U5H_136, IL_4A1B_121, IL_3V2F_066, IL_3DIR_005, IL_3U5H_131, IL_3U5H_039, IL_2ZJR_065, IL_3U5F_016, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_2XZM_024, IL_1S72_014, IL_1GID_002, IL_1R3E_002, IL_3IVK_003, IL_4A1B_095, IL_2IZ9_001, IL_4A1B_091, IL_2ZY6_002, IL_4A1B_039, IL_2QBG_070, IL_1ET4_004, IL_4A1B_031, IL_4A1B_036, IL_2XZM_056, IL_2XZM_057, IL_1FJG_007, IL_3U5H_129, IL_1FJG_002, IL_2QBG_007, IL_397D_001, IL_3U5H_125, IL_1S72_077, IL_3V2F_020, IL_3U5H_094, IL_1FJG_043, IL_4FRG_002, IL_3MEI_001, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_3U5H_002, IL_3P49_003, IL_4A1B_088, IL_1GID_012, IL_2XZM_021, IL_4A1B_084, IL_1U9S_001, IL_2AW7_048, IL_1DQH_001, IL_3U5F_066, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_4A1B_023, IL_1FJG_036, IL_3V2F_033, IL_1JZV_002, IL_4A1B_105, IL_2QUX_002, IL_3V2F_035, IL_3UCZ_003, IL_2VPL_002, IL_3V2F_038, IL_4A1B_101, IL_4A1B_100, IL_3U5H_050, IL_1FUF_002, IL_1FUF_003, IL_3U5H_055, IL_1FJG_016, IL_3U5H_058, IL_2XZM_029, IL_4A1B_006, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_2ZJR_072, IL_3DHS_002, IL_1NBS_005, IL_2ZJR_076	IL_3W3S_001, IL_3W3S_002, IL_4ANG_001, IL_4B5R_001

Children motifs

Child motif	Common motif instances	Only in IL_97217.5	Only in the child motif
IL_97217.6 Compare	IL_4FAW_004, IL_3SN2_001, IL_4ANG_001, IL_2AW7_051, IL_3V2F_045, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3U5H_136, IL_4A1B_051, IL_4A1B_050, IL_1ET4_004, IL_2C50_001, IL_2XZM_030, IL_3D2V_001, IL_2QBG_023, IL_1ET4_002, IL_3Q1Q_004, IL_3U5H_077, IL_3P49_003, IL_4A1B_088, IL_4A1B_124, IL_3D0U_005, IL_2PN4_003, IL_1CSL_002, IL_2QBG_099, IL_3V2F_056, IL_3U5F_058, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_4A1B_044, IL_2AW7_026, IL_2XZM_009, IL_4A1B_059, IL_3B31_001, IL_3U5F_069, IL_2XXA_010, IL_1MJI_001, IL_2XXA_012, IL_4A1B_056, IL_2NOK_006, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_1S72_014, IL_4A1B_010, IL_2QBG_089, IL_3U5H_142, IL_3SNP_001, IL_3V2F_104, IL_3V2F_002, IL_1FJG_040, IL_2QBG_007, IL_1FJG_043, IL_3U5H_003, IL_1S72_064, IL_1GID_012, IL_4A1B_072, IL_2AW7_019, IL_2PLY_002, IL_1S72_104, IL_1U9S_006, IL_6MSF_001, IL_1FUF_002, IL_3U5F_026, IL_3U5F_024, IL_3GX5_001, IL_3IWN_004, IL_3IWN_003, IL_1GID_009, IL_3U5H_089, IL_2OIU_003, IL_3U5H_065, IL_2OIU_001, IL_3U5H_050, IL_3W3S_001, IL_3V2F_077, IL_3V2F_073, IL_2AW7_008, IL_2C4Z_001, IL_2XZM_068, IL_3U5H_014, IL_2PJP_001, IL_1S72_074, IL_1MFQ_005, IL_1S72_070, IL_3U5H_013, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_1S72_040, IL_2QBG_076, IL_3U5H_094, IL_3OWZ_001, IL_3U5H_092, IL_3U5H_093, IL_3SUX_001, IL_3U5H_098, IL_2BQ5_001, IL_3U5H_030, IL_4A1C_003, IL_4A1C_002, IL_2BU1_001, IL_3R2D_001, IL_1DUQ_002, IL_3U5H_025, IL_2AW7_017, IL_4A1B_011, IL_3U5H_026, IL_2XZM_074, IL_3U5H_143, IL_3U5H_140, IL_1S72_088, IL_2XZM_065, IL_1FJG_016, IL_2QBG_107, IL_2QBG_069, IL_3W3S_002, IL_2QBG_104, IL_3U5F_009, IL_1S72_002, IL_4A1B_105, IL_3U5F_001, IL_3D0U_001, IL_3SD3_002, IL_2IZN_001, IL_2AW7_002, IL_3IVK_003, IL_2A64_002, IL_2IZM_001, IL_1U63_002, IL_1X8W_001, IL_2QBG_035, IL_3V2F_019, IL_4A1B_006, IL_1FJG_014, IL_1S72_096, IL_4A1B_123, IL_3DIR_001, IL_4A1B_121, IL_3V2F_066, IL_3DIR_005, IL_3U5H_131, IL_3U5H_039, IL_3U5F_016, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_1NBS_005, IL_1R3E_001, IL_1GID_002, IL_1R3E_002, IL_3U5H_125, IL_2A64_003, IL_4A1B_095, IL_2IZ9_001, IL_4A1B_091, IL_2ZY6_002, IL_4A1B_039, IL_1U9S_003, IL_2QBG_070, IL_4B5R_001, IL_4A1B_031, IL_4A1B_036, IL_2XZM_056, IL_2XZM_057, IL_1FJG_007, IL_2AW7_001, IL_1FJG_001, IL_1FJG_002, IL_2XZM_013, IL_397D_001, IL_4A1B_131, IL_1S72_077, IL_3V2F_020, IL_3OWZ_005, IL_4A1B_076, IL_4FRG_002, IL_3MEI_001, IL_1S72_027, IL_1S72_026, IL_2VPL_002, IL_3U5H_002, IL_3TZR_002, IL_3U5H_129, IL_1S72_067, IL_2XZM_021, IL_4A1B_084, IL_1U9S_001, IL_2AW7_048, IL_1DQH_001, IL_3U5F_066, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_4A1B_023, IL_1FJG_036, IL_3V2F_033, IL_1JZV_002, IL_1JZV_005, IL_2QUX_002, IL_3V2F_035, IL_3U5H_119, IL_3UCZ_002, IL_3V2F_038, IL_4A1B_101, IL_4A1B_100, IL_2XZM_023, IL_1S72_030, IL_1FUF_003, IL_3U5H_055, IL_2XZM_024, IL_3U5H_058, IL_2XZM_029, IL_3U5H_034, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_3UCZ_003, IL_1NBS_001, IL_1NBS_002, IL_4AOB_001, IL_3DHS_002, IL_3DHS_003	IL_2ZJR_056, IL_2ZJR_072, IL_2ZJR_034, IL_2ZJR_011, IL_2ZJR_031, IL_2ZJR_016, IL_2ZJR_015, IL_2ZJR_093, IL_2ZJR_068, IL_2ZJR_065, IL_2ZJR_002, IL_2ZJR_076	IL_1S72_045, IL_4IOA_057, IL_4IOA_011, IL_4IOA_075, IL_4IOA_064, IL_4IOA_016, IL_4IOA_101, IL_4IOA_015, IL_4IOA_031, IL_4IOA_002, IL_4IOA_034, IL_4IOA_071

Annotations: (163)
Single bulged A (14)
Single bulged U (12)
Single bulged A (H) (11)
Single bulged U (H) (7)
Multiple bulged bases (7)
Single bulged C (5)
Major groove intercalation (5)
Single bulged G (H) (5)
Major groove intercalation (H) (3)
Single bulged G (3)
Single bulged C (H) (2)
Minor groove platform (H) (1)
Bulged stacked bases (H) (1)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.04 | Avg 0.43 | Max 0.99

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Coloring options: Nucleotide numbers

Motif IL_97217.5 Version IL_97217.5 of this group appears in releases 1.0 to 1.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_97217.5 Version IL_97217.5 of this group appears in releases 1.0 to 1.0

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