RNA 3D Hub //

Representative Sets of DNA 3D Structures
Release 0.2, 2011-02-12

Exact match 59;

#Equivalence classRepresentativeResolutionNtsClass membersNAKB NA annotationNAKB protein annotation
1DNA_1.5_58008.1
Exact match
3C3Z|1|A+3C3Z|1|B (3C3Z)
  • HIV-1 subtype F genomic RNA
  • X-ray diffraction
  • Release Date: 2008-05-06
1.5 Å22(1) 3C3Z|1|A+3C3Z|1|BNULLNULL
2DNA_1.5_52460.1
Exact match
1EGW|1|E+1EGW|1|F (1EGW)
  • DNA (5'-D(*AP*AP*AP*GP*CP*TP*AP*TP*TP*AP[...]
  • X-ray diffraction
  • Release Date: 2000-03-20
1.5 Å17(2) 1EGW|1|E+1EGW|1|F, 1EGW|1|G+1EGW|1|HB-form double helix,double helix,structureDNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription
3DNA_1.5_95960.1
Exact match
1DFM|1|C+1DFM|1|D (1DFM)
  • DNA (5'-D(*CP*GP*(BRU)P*TP*AP*CP*CP*AP*([...]
  • X-ray diffraction
  • Release Date: 2000-02-21
1.5 Å16(2) 1DFM|1|C+1DFM|1|D, 1DP7|1|DB-form double helix,double helix,structureenzyme,hydrolase,nuclease
4DNA_1.5_20780.1
Exact match
1MNN|1|B+1MNN|1|C (1MNN)
  • 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*TP*GP*TP*C[...]
  • X-ray diffraction
  • Release Date: 2002-11-20
1.4 Å14(1) 1MNN|1|B+1MNN|1|CB-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
5DNA_1.5_86977.1
Exact match
3O1T|1|C+3O1T|1|B (3O1T)
  • 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*[...]
  • X-ray diffraction
  • Release Date: 2010-11-17
1.5 Å13(6) 3O1T|1|C+3O1T|1|B, 1PUY|1|A, 1PUY|1|B, 1K3X|1|B+1K3X|1|C, 1K3W|1|B+1K3W|1|C, 1LLM|1|A+1LLM|1|BB-form double helix,double helix,structureenzyme,hydrolase,nuclease
6DNA_1.5_17651.1
Exact match
1JES|1|A+1JES|1|B (1JES)
  • 5'-D(*CP*GP*CP*GP*(DPY)P*AP*TP*(DRP)P*CP[...]
  • X-ray diffraction
  • Release Date: 2001-11-23
1.5 Å12(1) 1JES|1|A+1JES|1|BZ-form double helix,double helix,structureNULL
7DNA_1.5_36368.1
Exact match
2O1I|1|A (2O1I)
  • 5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*CP*CP*CP*G[...]
  • X-ray diffraction
  • Release Date: 2007-01-09
1.1 Å12(1) 2O1I|1|Adouble helix,structureNULL
8DNA_1.5_64051.1
Exact match
3NZ7|1|A (3NZ7)
  • 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G[...]
  • X-ray diffraction
  • Release Date: 2010-08-25
1.1 Å12(2) 3NZ7|1|A, 3NYP|1|Afunction,quadruplex,structure,telomeric DNANULL
9DNA_1.5_65376.1
Exact match
3NZ7|1|B (3NZ7)
  • 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G[...]
  • X-ray diffraction
  • Release Date: 2010-08-25
1.1 Å12(2) 3NZ7|1|B, 3NYP|1|Bfunction,quadruplex,structure,telomeric DNANULL
10DNA_1.5_96391.1
Exact match
1FQ2|1|A+1FQ2|1|B (1FQ2)
  • 5'-D(*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*[...]
  • X-ray diffraction
  • Release Date: 2000-11-27
1.2 Å12(25) 1FQ2|1|A+1FQ2|1|B, 1N1O|1|A+1N1O|1|B, 1DC0|1|A+1DC0|1|B, 1DPN|1|A+1DPN|1|B, 3FDE|1|C+3FDE|1|F, 3FDE|1|D+3FDE|1|E, 2FII|1|A+2FII|1|B, 3EY3|1|A+3EY3|1|B, 3EY3|1|C+3EY3|1|D, 2FIH|1|A+2FIH|1|B, 1EI4|1|A+1EI4|1|B, 2B3E|1|A+2B3E|1|B, 455D|1|A+455D|1|B, 436D|1|A+436D|1|B, 2DYW|1|A+2DYW|1|B, 460D|1|A+460D|1|B, 1JGR|1|A+1JGR|1|B, 2VLA|1|L+2VLA|1|M, 355D|1|A+355D|1|B, 403D|1|A+403D|1|B, 2EA0|1|B+2EA0|1|C, 463D|1|A+463D|1|B, 2DPB|1|A+2DPB|1|B, 461D|1|A+461D|1|B, 3JXY|1|B+3JXY|1|CA-form double helix,double helix,structureNULL
11DNA_1.5_31290.1
Exact match
476D|1|A+476D|1|B (476D)
  • 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP[...]
  • X-ray diffraction
  • Release Date: 1999-07-19
1.3 Å11(9) 476D|1|A+476D|1|B, 3NDH|1|C+3NDH|1|D, 2OAA|1|C+2OAA|1|D, 2OAA|1|E+2OAA|1|F, 2ODI|1|C+2ODI|1|D, 2ODI|1|E+2ODI|1|F, 3GOX|1|C+3GOX|1|D, 2AVH|1|A, 2NQ9|1|D+2NQ9|1|B+2NQ9|1|Cquadruplex,structureNULL
12DNA_1.5_34095.1
Exact match
1D8G|1|A (1D8G)
  • 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*GP*)-3'
  • X-ray diffraction
  • Release Date: 2000-02-21
0.7 Å10(1) 1D8G|1|AB-form double helix,double helix,structureNULL
13DNA_1.5_68331.1
Exact match
3OMJ|1|A+3OMJ|1|B (3OMJ)
  • 5'-D(*CP*(C38)P*AP*GP*TP*AP*CP*TP*GP*G)-[...]
  • X-ray diffraction
  • Release Date: 2010-09-08
1.0 Å10(55) 3OMJ|1|A+3OMJ|1|B, 1KGK|1|A+1KGK|1|B, 1DPL|1|A+1DPL|1|B, 3I5E|1|A, 1EN8|1|A, 3I5L|1|A+3I5L|1|B, 1ENE|1|A, 3EY2|1|A+3EY2|1|B, 1EN9|1|A, 1EN3|1|A, 1MLX|1|A+1MLX|1|B, 3OZ5|1|A+3OZ5|1|B, 2FIJ|1|A+2FIJ|1|B, 1M77|1|A, 1R3G|1|A+1R3G|1|B, 1PWF|1|A+1PWF|1|B, 1I5W|1|A+1I5W|1|B, 1Y8L|1|A+1Y8L|1|B, 1I0G|1|A+1I0G|1|B, 1Y8V|1|A+1Y8V|1|B, 1I0J|1|A+1I0J|1|B, 1I0M|1|A+1I0M|1|B, 1I0K|1|A+1I0K|1|B, 1ZF1|1|A+1ZF1|1|B, 1I0P|1|A+1I0P|1|B, 1ZF9|1|A+1ZF9|1|B, 1ZF7|1|A+1ZF7|1|B, 2B2B|1|A+2B2B|1|B, 1ZF8|1|A+1ZF8|1|B, 1NVY|1|A+1NVY|1|B, 1ZF5|1|A, 1ZF0|1|A+1ZF0|1|B, 1L6B|1|A+1L6B|1|B, 1I0N|1|A+1I0N|1|B, 1ZF6|1|A+1ZF6|1|B, 1ZFF|1|A, 3GGK|1|A, 1SK5|1|A+1SK5|1|B, 3GGI|1|A, 440D|1|A+440D|1|B, 431D|1|A+431D|1|B, 1D8X|1|A+1D8X|1|B, 1XUW|1|A+1XUW|1|B, 1I0Q|1|A+1I0Q|1|B, 1XUX|1|A+1XUX|1|B, 1MA8|1|A+1MA8|1|B, 1D61|1|A, 232D|1|A, 3DNB|1|A, 1XUX|1|C+1XUX|1|D, 5DNB|1|A, 441D|1|A, 1D49|1|A+1D49|1|B, 1D23|1|A+1D23|1|B, 1D9R|1|A+1D9R|1|BB-form double helix,double helix,structureNULL
14DNA_1.5_77675.1
Exact match
1ENN|1|A+1ENN|1|B (1ENN)
  • 5'-D(*GP*(C38)P*GP*AP*AP*AP*GP*CP*T)-3',[...]
  • X-ray diffraction
  • Release Date: 2000-05-03
0.9 Å9(2) 1ENN|1|A+1ENN|1|B, 1UE2|1|AB-form double helix,double helix,structureNULL
15DNA_1.5_21697.1
Exact match
1PFE|1|A (1PFE)
  • 5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3', 5'-D(*[...]
  • X-ray diffraction
  • Release Date: 2004-06-08
1.1 Å8(30) 1PFE|1|A, 2HC7|1|A, 3HG8|1|A, 1Z7I|1|A, 3LTU|1|A, 3IKI|1|A, 3IFI|1|A, 3IJK|1|A, 3GO3|1|A+3GO3|1|B, 1XVK|1|A, 3LTR|1|A, 2NSK|1|A, 1WTO|1|B+1WTO|1|C, 3K18|1|A, 1XVN|1|A, 1XYI|1|B+1XYI|1|C, 284D|1|A+284D|1|B, 454D|1|A+454D|1|B, 454D|1|C+454D|1|D, 454D|1|E+454D|1|F, 454D|1|G+454D|1|H, 454D|1|I+454D|1|J, 1D78|1|A, 2PLO|1|A+2PLO|1|B, 1D79|1|A, 1C8C|1|B+1C8C|1|C, 344D|1|A, 3FA1|1|A, 2DLJ|1|A, 295D|1|Adouble helix,feature,mispair,structurechromatin,nucleosome,structural
16DNA_1.5_35093.1
Exact match
485D|1|A+485D|1|B (485D)
  • RNA/DNA(5'-R(*CP*GP*UP*GP*AP*UP*CP*GP)-D[...]
  • X-ray diffraction
  • Release Date: 1999-12-18
1.0 Å7(1) 485D|1|A+485D|1|BA-form double helix,double helix,structureNULL
17DNA_1.5_77295.1
Exact match
315D|1|A+315D|1|B (315D)
  • DNA/RNA (5'-R(*GP*UP*AP*UP*GP*UP*AP*)-D([...]
  • X-ray diffraction
  • Release Date: 1997-09-23
1.4 Å7(1) 315D|1|A+315D|1|BA-form double helix,double helix,structureNULL
18DNA_1.5_96364.1
Exact match
3FL6|1|A+3FL6|1|B (3FL6)
  • 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*[...]
  • X-ray diffraction
  • Release Date: 2009-12-29
1.2 Å7(8) 3FL6|1|A+3FL6|1|B, 3FL6|1|C+3FL6|1|D, 3EYI|1|C+3EYI|1|D, 1MF5|1|A, 1MF5|1|B, 1QYL|1|A, 1QYK|1|A, 1QYK|1|Bquadruplex,structureNULL
19DNA_1.5_01296.1
Exact match
352D|1|K (352D)
  • DNA (5'-D(*TP*GP*GP*GP*GP*T)-3')
  • X-ray diffraction
  • Release Date: 1997-11-10
1.0 Å6(1) 352D|1|Kquadruplex,structureNULL
20DNA_1.5_03269.1
Exact match
2HAX|1|C (2HAX)
  • 5'-D(*TP*TP*TP*TP*TP*T)-3'
  • X-ray diffraction
  • Release Date: 2007-04-24
1.3 Å6(2) 2HAX|1|C, 2HAX|1|DNULLregulatory,transcription
21DNA_1.5_17936.1
Exact match
1EM0|1|A+1EM0|1|B (1EM0)
  • 5'-D(*AP*AP*AP*GP*AP*T)-3', 5'-D(*CP*CP*[...]
  • X-ray diffraction
  • Release Date: 2000-08-21
0.9 Å6(78) 1EM0|1|A+1EM0|1|B, 1EM0|1|C+1EM0|1|D, 1M69|1|A, 1O0K|1|A, 1O0K|1|B, 1O0K|1|C, 1O0K|1|D, 3FT6|1|A+3FT6|1|B, 2O4F|1|A, 2O4F|1|B, 2O4F|1|C, 2O4F|1|D, 2O4F|1|E, 2O4F|1|F, 2O4F|1|G, 2O4F|1|H, 1XCS|1|A+1XCS|1|B, 1Z3F|1|A+1Z3F|1|B, 1R68|1|A, 352D|1|A, 352D|1|B, 352D|1|C, 352D|1|D, 352D|1|E, 352D|1|F, 352D|1|G, 352D|1|H, 352D|1|I, 352D|1|J, 352D|1|L, 352D|1|M, 352D|1|N, 352D|1|O, 352D|1|P, 1FD5|1|A+1FD5|1|B, 1D11|1|A, 244D|1|A, 367D|1|A+367D|1|B, 244D|1|B, 244D|1|C, 244D|1|D, 244D|1|E, 244D|1|F, 244D|1|G, 244D|1|H, 244D|1|I, 244D|1|J, 244D|1|K, 244D|1|L, 244D|1|M, 244D|1|N, 244D|1|O, 244D|1|P, 1D35|1|A, 366D|1|A, 1P20|1|A, 151D|1|A, 2D34|1|A, 152D|1|A, 224D|1|A+224D|1|B, 1K9G|1|A, 1D54|1|A, 245D|1|A+245D|1|B, 1IH6|1|A+1IH6|1|B, 1IH6|1|C+1IH6|1|D, 1IH6|1|E+1IH6|1|F, 1IH6|1|G+1IH6|1|H, 2DES|1|A+2DES|1|B, 1D14|1|A, 1DA0|1|A, 1D10|1|A, 308D|1|A+308D|1|B, 1IMS|1|A, 1D15|1|A, 1D36|1|A, 1D33|1|A, 1SX5|1|C+1SX5|1|F, 1SX5|1|E+1SX5|1|DB-form double helix,double helix,structureNULL
22DNA_1.5_26038.1
Exact match
1VRO|1|A+1VRO|1|B (1VRO)
  • 5'-D(*CP*(GMS)P*CP*GP*CP*G)-3', 5'-D(*CP[...]
  • X-ray diffraction
  • Release Date: 2005-04-19
1.1 Å6(32) 1VRO|1|A+1VRO|1|B, 2F8W|1|A+2F8W|1|B, 2OBZ|1|A+2OBZ|1|B, 1WOE|1|A+1WOE|1|B, 1I0T|1|A+1I0T|1|B, 2DCG|1|A+2DCG|1|B, 1ICK|1|A+1ICK|1|B, 293D|1|A+293D|1|B, 292D|1|A+292D|1|B, 1DCG|1|A+1DCG|1|B, 1D48|1|A+1D48|1|B, 336D|1|A+336D|1|B, 1DJ6|1|A+1DJ6|1|B, 131D|1|A+131D|1|B, 2ELG|1|A+2ELG|1|B, 1D39|1|A+1D39|1|B, 145D|1|A, 145D|1|B, 145D|1|C, 145D|1|D, 1D41|1|A, 1D40|1|A, 362D|1|A+362D|1|B, 1D76|1|A+1D76|1|B, 1OMK|1|A+1OMK|1|B, 1D40|1|B, 1D41|1|B, 210D|1|A, 1DN5|1|A, 1DN5|1|B, 417D|1|A+417D|1|B, 1DNF|1|A+1DNF|1|BZ-form double helix,double helix,structureNULL
23DNA_1.5_47046.1
Exact match
427D|1|A (427D)
  • DNA (5'-D(*CP*GP*CP*(G49)P*CP*G)-3')
  • X-ray diffraction
  • Release Date: 2000-01-24
1.1 Å6(1) 427D|1|AB-form double helix,double helix,structureNULL
24DNA_1.5_99796.1
Exact match
1XVR|1|A+1XVR|1|C (1XVR)
  • 5'-D(*CP*GP*TP*AP*CP*G)-3'
  • X-ray diffraction
  • Release Date: 2005-04-12
1.4 Å6(1) 1XVR|1|A+1XVR|1|Cdouble helix,structureNULL
25DNA_1.5_43082.1
Exact match
1N7A|1|A (1N7A)
  • RNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*G[...]
  • X-ray diffraction
  • Release Date: 2003-03-04
1.2 Å5(16) 1N7A|1|A, 1N7A|1|B, 1N7A|1|C, 1N7A|1|D, 1N7A|1|E, 1N7A|1|F, 1N7A|1|G, 1N7A|1|H, 1N7B|1|A, 1N7B|1|B, 1N7B|1|C, 1N7B|1|D, 1N7B|1|E, 1N7B|1|F, 1N7B|1|G, 1N7B|1|Hquadruplex,structureNULL
26DNA_1.5_06339.1
Exact match
191D|1|A (191D)
  • DNA (5'-D(*CP*CP*CP*T)-3')
  • X-ray diffraction
  • Release Date: 1994-11-30
1.4 Å4(1) 191D|1|AI-motif,parallel helix,structureNULL
27DNA_1.5_10507.1
Exact match
1ZNA|1|A+1ZNA|1|B (1ZNA)
  • DNA (5'-D(*CP*GP*CP*G)-3')
  • X-ray diffraction
  • Release Date: 1981-03-18
1.5 Å4(2) 1ZNA|1|A+1ZNA|1|B, 1D53|1|C+1D53|1|DZ-form double helix,double helix,structureNULL
28DNA_1.5_11486.1
Exact match
191D|1|C (191D)
  • DNA (5'-D(*CP*CP*CP*T)-3')
  • X-ray diffraction
  • Release Date: 1994-11-30
1.4 Å4(1) 191D|1|CI-motif,parallel helix,structureNULL
29DNA_1.5_42621.1
Exact match
191D|1|B (191D)
  • DNA (5'-D(*CP*CP*CP*T)-3')
  • X-ray diffraction
  • Release Date: 1994-11-30
1.4 Å4(1) 191D|1|BI-motif,parallel helix,structureNULL
30DNA_1.5_44532.1
Exact match
191D|1|D (191D)
  • DNA (5'-D(*CP*CP*CP*T)-3')
  • X-ray diffraction
  • Release Date: 1994-11-30
1.4 Å4(1) 191D|1|DI-motif,parallel helix,structureNULL
31DNA_1.5_09850.1
Exact match
1O56|1|B (1O56)
  • DNA (5'-CD(*AP*AP*AP*)-3')
  • X-ray diffraction
  • Release Date: 2003-08-26
0.9 Å3(1) 1O56|1|Bcyclic,feature,structureNULL
32DNA_1.5_39895.1
Exact match
3I3M|1|B (3I3M)
  • DNA (5'-D(P*TP*(ME6)P*T)-3')
  • X-ray diffraction
  • Release Date: 2009-08-25
1.5 Å3(1) 3I3M|1|BNULLenzyme,oxidoreductase
33DNA_1.5_52259.1
Exact match
1O55|1|B (1O55)
  • DNA (5'-CD(*AP*AP*AP)-3')
  • X-ray diffraction
  • Release Date: 2003-08-26
1.0 Å3(1) 1O55|1|Bcyclic,feature,structureNULL
34DNA_1.5_86936.1
Exact match
1O56|1|A (1O56)
  • DNA (5'-CD(*AP*AP*AP*)-3')
  • X-ray diffraction
  • Release Date: 2003-08-26
0.9 Å3(1) 1O56|1|Acyclic,feature,structureNULL
35DNA_1.5_90118.1
Exact match
1O55|1|A (1O55)
  • DNA (5'-CD(*AP*AP*AP)-3')
  • X-ray diffraction
  • Release Date: 2003-08-26
1.0 Å3(1) 1O55|1|Acyclic,feature,structureNULL
36DNA_1.5_33361.1
Exact match
3BBB|1|G (3BBB)
  • DNA (5'-D(*AP*G)-3'), DNA (5'-D(*CP*GP*C[...]
  • X-ray diffraction
  • Release Date: 2008-09-23
1.3 Å2(8) 3BBB|1|G, 3BBB|1|H, 3BBB|1|I, 3BBB|1|J, 1DN8|1|A, 1D53|1|A, 1DN8|1|B, 1D53|1|BZ-form double helix,double helix,structureNULL
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