1U6P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1U6P_001 | 1/B/288:293 | GNRA | geometric HL_5DDO_001 HL_34789.4 | |
| HL_1U6P_002 | 1/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_003 | 1/B/362:367 | No text annotation | ||
| HL_1U6P_004 | 2/B/288:293 | GNRA | geometric HL_5DDO_001 HL_34789.4 | |
| HL_1U6P_005 | 2/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_006 | 2/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_007 | 3/B/288:293 | GNRA | geometric HL_5TBW_025 NA | |
| HL_1U6P_008 | 3/B/328:333 | GNRA | geometric HL_4LFB_022 HL_34789.4 | |
| HL_1U6P_009 | 3/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_010 | 4/B/288:293 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_011 | 4/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_012 | 4/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_013 | 5/B/288:293 | GNRA | geometric HL_7A0S_005 HL_34789.4 | |
| HL_1U6P_014 | 5/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_015 | 5/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_016 | 6/B/288:293 | GNRA | geometric HL_5TBW_025 NA | |
| HL_1U6P_017 | 6/B/328:333 | GNRA | geometric HL_6AZ4_001 HL_34789.4 | |
| HL_1U6P_018 | 6/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_019 | 7/B/288:293 | GNRA | geometric HL_5DDO_001 HL_34789.4 | |
| HL_1U6P_020 | 7/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_021 | 7/B/362:367 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_1U6P_022 | 8/B/288:293 | GNRA | geometric HL_5DDO_001 HL_34789.4 | |
| HL_1U6P_023 | 8/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_024 | 8/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_025 | 9/B/288:293 | GNRA | geometric HL_5TBW_025 NA | |
| HL_1U6P_026 | 9/B/328:333 | GNRA | geometric HL_4LFB_022 HL_34789.4 | |
| HL_1U6P_027 | 9/B/362:367 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_1U6P_028 | 10/B/288:293 | GNRA | geometric HL_4V9F_028 HL_34789.4 | |
| HL_1U6P_029 | 10/B/328:333 | GNRA | geometric HL_6AZ4_001 HL_34789.4 | |
| HL_1U6P_030 | 10/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_031 | 11/B/288:293 | GNRA | geometric HL_5DDO_001 HL_34789.4 | |
| HL_1U6P_032 | 11/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_033 | 11/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_034 | 12/B/288:293 | GNRA | geometric HL_7A0S_005 HL_34789.4 | |
| HL_1U6P_035 | 12/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_036 | 12/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_037 | 13/B/288:293 | GNRA | geometric HL_5DDO_001 HL_34789.4 | |
| HL_1U6P_038 | 13/B/328:333 | GNRA | geometric HL_5TBW_025 NA | |
| HL_1U6P_039 | 13/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_040 | 14/B/288:293 | GNRA | geometric HL_5DDO_001 HL_34789.4 | |
| HL_1U6P_041 | 14/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_042 | 14/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_043 | 15/B/288:293 | GNRA | geometric HL_5DDO_001 HL_34789.4 | |
| HL_1U6P_044 | 15/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_045 | 15/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_046 | 16/B/288:293 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_047 | 16/B/328:333 | GNRA | geometric HL_4LFB_022 HL_34789.4 | |
| HL_1U6P_048 | 16/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_049 | 17/B/288:293 | GNRA | geometric HL_5DDO_001 HL_34789.4 | |
| HL_1U6P_050 | 17/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_051 | 17/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_052 | 18/B/288:293 | GNRA | geometric HL_5TBW_025 NA | |
| HL_1U6P_053 | 18/B/328:333 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1U6P_054 | 18/B/362:367 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.3 | |
| HL_1U6P_055 | 19/B/288:293 | GNRA | geometric HL_5TBW_025 NA | |
| HL_1U6P_056 | 19/B/328:333 | GNRA | geometric HL_5TBW_048 NA | |
| HL_1U6P_057 | 19/B/362:367 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_1U6P_058 | 20/B/288:293 | GNRA | geometric HL_5TBW_025 NA | |
| HL_1U6P_059 | 20/B/328:333 | GNRA | geometric HL_6AZ4_001 HL_34789.4 | |
| HL_1U6P_060 | 20/B/362:367 | No text annotation | geometric HL_5TBW_006 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1U6P_001 | 1/B/280:283, 1/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.2 | |
| IL_1U6P_087 | 1/B/313:316, 1/B/348:349 | No text annotation | ||
| IL_1U6P_003 | 1/B/318:320, 1/B/345:346 | No text annotation | ||
| IL_1U6P_004 | 1/B/323:324, 1/B/337:342 | No text annotation | ||
| IL_1U6P_005 | 2/B/280:283, 2/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_1U6P_088 | 2/B/313:316, 2/B/348:349 | No text annotation | ||
| IL_1U6P_007 | 2/B/318:320, 2/B/345:346 | No text annotation | ||
| IL_1U6P_008 | 2/B/323:324, 2/B/337:342 | No text annotation | ||
| IL_1U6P_009 | 3/B/280:283, 3/B/298:301 | Self complementary | geometric IL_3NDB_001 NA | |
| IL_1U6P_089 | 3/B/313:316, 3/B/348:349 | No text annotation | ||
| IL_1U6P_011 | 3/B/318:320, 3/B/345:346 | No text annotation | ||
| IL_1U6P_012 | 3/B/323:324, 3/B/337:342 | No text annotation | ||
| IL_1U6P_013 | 4/B/280:283, 4/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_1U6P_090 | 4/B/313:316, 4/B/348:349 | No text annotation | ||
| IL_1U6P_015 | 4/B/318:320, 4/B/345:346 | No text annotation | ||
| IL_1U6P_016 | 4/B/323:324, 4/B/337:342 | No text annotation | ||
| IL_1U6P_017 | 5/B/280:283, 5/B/298:301 | Self complementary | geometric IL_3NDB_001 NA | |
| IL_1U6P_091 | 5/B/313:316, 5/B/348:349 | No text annotation | ||
| IL_1U6P_019 | 5/B/318:320, 5/B/345:346 | No text annotation | ||
| IL_1U6P_020 | 5/B/323:324, 5/B/337:342 | No text annotation | ||
| IL_1U6P_021 | 6/B/280:283, 6/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_1U6P_092 | 6/B/313:316, 6/B/348:349 | No text annotation | ||
| IL_1U6P_023 | 6/B/318:320, 6/B/345:346 | No text annotation | ||
| IL_1U6P_024 | 6/B/323:324, 6/B/337:342 | No text annotation | ||
| IL_1U6P_025 | 7/B/280:283, 7/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_1U6P_093 | 7/B/313:316, 7/B/348:349 | No text annotation | ||
| IL_1U6P_027 | 7/B/318:320, 7/B/345:346 | No text annotation | ||
| IL_1U6P_028 | 7/B/323:324, 7/B/337:342 | No text annotation | ||
| IL_1U6P_029 | 8/B/280:283, 8/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_1U6P_094 | 8/B/313:316, 8/B/348:349 | No text annotation | ||
| IL_1U6P_031 | 8/B/318:320, 8/B/345:346 | No text annotation | ||
| IL_1U6P_032 | 8/B/323:324, 8/B/337:342 | No text annotation | ||
| IL_1U6P_033 | 9/B/280:283, 9/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_1U6P_095 | 9/B/313:316, 9/B/348:349 | No text annotation | ||
| IL_1U6P_035 | 9/B/318:320, 9/B/345:346 | No text annotation | ||
| IL_1U6P_036 | 9/B/323:324, 9/B/337:342 | No text annotation | ||
| IL_1U6P_037 | 10/B/280:283, 10/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_1U6P_096 | 10/B/313:316, 10/B/348:349 | No text annotation | ||
| IL_1U6P_039 | 10/B/318:320, 10/B/345:346 | No text annotation | ||
| IL_1U6P_040 | 10/B/323:324, 10/B/337:342 | No text annotation | ||
| IL_1U6P_041 | 11/B/280:283, 11/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_1U6P_097 | 11/B/313:316, 11/B/348:349 | No text annotation | ||
| IL_1U6P_043 | 11/B/318:320, 11/B/345:346 | No text annotation | ||
| IL_1U6P_044 | 11/B/323:324, 11/B/337:342 | No text annotation | ||
| IL_1U6P_045 | 12/B/280:283, 12/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_1U6P_098 | 12/B/313:316, 12/B/348:349 | No text annotation | ||
| IL_1U6P_047 | 12/B/318:320, 12/B/345:346 | No text annotation | ||
| IL_1U6P_048 | 12/B/323:324, 12/B/337:342 | No text annotation | ||
| IL_1U6P_049 | 13/B/280:283, 13/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_1U6P_099 | 13/B/313:316, 13/B/348:349 | No text annotation | ||
| IL_1U6P_051 | 13/B/318:320, 13/B/345:346 | No text annotation | ||
| IL_1U6P_052 | 13/B/323:324, 13/B/337:342 | No text annotation | ||
| IL_1U6P_053 | 14/B/280:283, 14/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_1U6P_055 | 14/B/313:316, 14/B/348:349 | No text annotation | ||
| IL_1U6P_056 | 14/B/318:320, 14/B/345:346 | No text annotation | ||
| IL_1U6P_057 | 14/B/323:324, 14/B/337:342 | No text annotation | ||
| IL_1U6P_058 | 15/B/280:283, 15/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_1U6P_060 | 15/B/313:316, 15/B/348:349 | No text annotation | ||
| IL_1U6P_061 | 15/B/318:320, 15/B/345:346 | No text annotation | ||
| IL_1U6P_062 | 15/B/323:324, 15/B/337:342 | No text annotation | ||
| IL_1U6P_063 | 16/B/280:283, 16/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_1U6P_064 | 16/B/313:316, 16/B/348:349 | Minor groove platform | geometric IL_4KQY_004 IL_94991.2 | |
| IL_1U6P_065 | 16/B/318:320, 16/B/345:346 | No text annotation | ||
| IL_1U6P_066 | 16/B/323:324, 16/B/337:342 | No text annotation | ||
| IL_1U6P_067 | 17/B/280:283, 17/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_1U6P_069 | 17/B/313:316, 17/B/348:349 | No text annotation | ||
| IL_1U6P_070 | 17/B/318:320, 17/B/345:346 | No text annotation | ||
| IL_1U6P_071 | 17/B/323:324, 17/B/337:342 | No text annotation | ||
| IL_1U6P_072 | 18/B/280:283, 18/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.2 | |
| IL_1U6P_100 | 18/B/313:316, 18/B/348:349 | No text annotation | ||
| IL_1U6P_074 | 18/B/318:320, 18/B/345:346 | No text annotation | ||
| IL_1U6P_075 | 18/B/323:324, 18/B/337:342 | No text annotation | ||
| IL_1U6P_076 | 19/B/280:283, 19/B/298:301 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_1U6P_078 | 19/B/313:316, 19/B/348:349 | No text annotation | ||
| IL_1U6P_079 | 19/B/318:320, 19/B/345:346 | No text annotation | ||
| IL_1U6P_080 | 19/B/323:324, 19/B/337:342 | No text annotation | ||
| IL_1U6P_081 | 20/B/280:283, 20/B/298:301 | Self complementary | geometric IL_3NDB_001 NA | |
| IL_1U6P_083 | 20/B/313:316, 20/B/348:349 | No text annotation | ||
| IL_1U6P_084 | 20/B/318:320, 20/B/345:346 | No text annotation | ||
| IL_1U6P_085 | 20/B/323:324, 20/B/337:342 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1U6P_002 | No text annotation | ||
| IL_1U6P_006 | No text annotation | ||
| IL_1U6P_010 | No text annotation | ||
| IL_1U6P_014 | No text annotation | ||
| IL_1U6P_018 | No text annotation | ||
| IL_1U6P_022 | No text annotation | ||
| IL_1U6P_026 | No text annotation | ||
| IL_1U6P_030 | No text annotation | ||
| IL_1U6P_034 | No text annotation | ||
| IL_1U6P_038 | No text annotation | ||
| IL_1U6P_042 | No text annotation | ||
| IL_1U6P_046 | No text annotation | ||
| IL_1U6P_050 | No text annotation | ||
| IL_1U6P_054 | Isolated non-canonical cWW pair | ||
| IL_1U6P_059 | No text annotation | ||
| IL_1U6P_068 | No text annotation | ||
| IL_1U6P_073 | No text annotation | ||
| IL_1U6P_077 | No text annotation | ||
| IL_1U6P_082 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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