9N73 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9N73_025 | 1/L1/1778:1783 | Mini UNCG | geometric HL_4ZLD_001 HL_12626.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9N73_001 | GNRA related | ||
| HL_9N73_002 | No text annotation | ||
| HL_9N73_003 | No text annotation | ||
| HL_9N73_004 | No text annotation | ||
| HL_9N73_005 | No text annotation | ||
| HL_9N73_006 | No text annotation | ||
| HL_9N73_007 | No text annotation | ||
| HL_9N73_008 | No text annotation | ||
| HL_9N73_009 | No text annotation | ||
| HL_9N73_010 | No text annotation | ||
| HL_9N73_011 | No text annotation | ||
| HL_9N73_012 | No text annotation | ||
| HL_9N73_013 | No text annotation | ||
| HL_9N73_014 | No text annotation | ||
| HL_9N73_015 | No text annotation | ||
| HL_9N73_016 | No text annotation | ||
| HL_9N73_017 | No text annotation | ||
| HL_9N73_018 | No text annotation | ||
| HL_9N73_019 | No text annotation | ||
| HL_9N73_020 | No text annotation | ||
| HL_9N73_021 | No text annotation | ||
| HL_9N73_022 | No text annotation | ||
| HL_9N73_023 | No text annotation | ||
| HL_9N73_024 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9N73_028 | 1/L1/552:559, 1/L1/568:584 | No text annotation | ||
| IL_9N73_035 | 1/L1/885:888, 1/L1/924:927 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.5 | |
| IL_9N73_043 | 1/L1/1122:1123, 1/L2/1:3 | Single bulged U | geometric IL_2OIU_003 IL_97561.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9N73_001 | Single bulged G | ||
| IL_9N73_002 | Single bulged C | ||
| IL_9N73_003 | Single bulged A | ||
| IL_9N73_004 | No text annotation | ||
| IL_9N73_005 | No text annotation | ||
| IL_9N73_006 | Tandem non-canonical cWW pairs | ||
| IL_9N73_007 | No text annotation | ||
| IL_9N73_008 | No text annotation | ||
| IL_9N73_009 | No text annotation | ||
| IL_9N73_010 | Isolated cWH basepair | ||
| IL_9N73_011 | No text annotation | ||
| IL_9N73_012 | No text annotation | ||
| IL_9N73_013 | No text annotation | ||
| IL_9N73_014 | Isolated non-canonical cWW pair | ||
| IL_9N73_015 | Single bulged A | ||
| IL_9N73_016 | No text annotation | ||
| IL_9N73_017 | Single bulged U | ||
| IL_9N73_018 | Kink-turn with non-sequential stacking | ||
| IL_9N73_019 | No text annotation | ||
| IL_9N73_020 | Isolated non-canonical cWW pair | ||
| IL_9N73_021 | Isolated non-canonical cWW pair | ||
| IL_9N73_022 | No text annotation | ||
| IL_9N73_023 | Single bulged G | ||
| IL_9N73_024 | Single bulged A | ||
| IL_9N73_025 | No text annotation | ||
| IL_9N73_026 | Tandem non-canonical cWW pairs | ||
| IL_9N73_027 | No text annotation | ||
| IL_9N73_029 | Isolated non-canonical cWW pair | ||
| IL_9N73_030 | No text annotation | ||
| IL_9N73_031 | Major groove platform; stack outside cWW | ||
| IL_9N73_032 | Single bulged U | ||
| IL_9N73_033 | Tandem non-canonical cWW pairs | ||
| IL_9N73_034 | Tandem non-canonical cWW pairs | ||
| IL_9N73_036 | No text annotation | ||
| IL_9N73_037 | No text annotation | ||
| IL_9N73_038 | No text annotation | ||
| IL_9N73_039 | No text annotation | ||
| IL_9N73_040 | Tandem non-canonical cWW pairs | ||
| IL_9N73_041 | Single stack bend | ||
| IL_9N73_042 | No text annotation | ||
| IL_9N73_044 | No text annotation | ||
| IL_9N73_045 | Isolated non-canonical cWW pair | ||
| IL_9N73_046 | Isolated non-canonical cWW pair | ||
| IL_9N73_047 | Single bulged U | ||
| IL_9N73_048 | Single bulged A | ||
| IL_9N73_049 | No text annotation | ||
| IL_9N73_050 | No text annotation | ||
| IL_9N73_051 | Isolated non-canonical cWW pair | ||
| IL_9N73_052 | Isolated non-canonical cWW pair | ||
| IL_9N73_053 | No text annotation | ||
| IL_9N73_054 | No text annotation | ||
| IL_9N73_055 | Double sheared | ||
| IL_9N73_056 | Isolated non-canonical cWW pair | ||
| IL_9N73_057 | Tandem non-canonical cWW pairs | ||
| IL_9N73_058 | No text annotation | ||
| IL_9N73_059 | Isolated cWH basepair | ||
| IL_9N73_060 | Isolated cWH basepair | ||
| IL_9N73_061 | No text annotation | ||
| IL_9N73_062 | No text annotation | ||
| IL_9N73_063 | No text annotation | ||
| IL_9N73_064 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9N73_003 | 1/L1/881:884, 1/L1/928:936, 1/L1/943:947 | No text annotation | homologous J3_9PN5_033 NA | |
| J3_9N73_005 | 1/L1/1150:1151, 1/L1/1627:1629, 1/L1/1636:1640 | No text annotation | ||
| J3_9N73_006 | 1/L1/1161:1164, 1/L1/1581:1587, 1/L1/1609:1616 | No text annotation | homologous J3_9PN5_035 J3_85722.4 | |
| J3_9N73_008 | 1/L1/1470:1474, 1/L1/1533:1540, 1/L1/1571:1574 | No text annotation | homologous J3_9PN5_043 J3_03192.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9N73_001 | No text annotation | ||
| J3_9N73_002 | No text annotation | ||
| J3_9N73_004 | No text annotation | ||
| J3_9N73_007 | No text annotation | ||
| J4_9N73_001 | No text annotation |
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