Motif IL_29931.1 Version IL_29931.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-5 | 2-12 | 6-9 | 6-12 | 7-8 | 13-14 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4BTS | 0.1393 | 1 | DA | SSU rRNA | G | 556 | U | 557 | G | 558 | C | 559 | C | 560 | A | 561 | G | 562 | * | C | 569 | G | 570 | G | 571 | U | 572 | A | 574 | U | 575 | U | 576 | C | 577 | cWW | cSW | tWH | tHS | ntWW | cWW | cSH | |
| 2 | ➜ | 3J7A | 0.0000 | 1 | A | SSU rRNA | G | 569 | U | 570 | G | 571 | C | 572 | C | 573 | A | 574 | G | 575 | * | C | 582 | G | 583 | G | 584 | U | 585 | A | 587 | U | 588 | U | 589 | C | 590 | cWW | ncSW | tWH | tHS | ntWW | cWW | ||
| 3 | ➜ | 3JAM | 0.0917 | 1 | 2 | SSU rRNA | G | 561 | U | 562 | G | 563 | C | 564 | C | 565 | A | 566 | G | 567 | * | C | 574 | G | 575 | G | 576 | U | 577 | A | 579 | U | 580 | U | 581 | C | 582 | cWW | cSW | tWH | tHS | ntWW | cWW | ||
| 4 | ➜ | 5A2Q | 0.0970 | 1 | 2 | SSU rRNA | G | 611 | U | 612 | G | 613 | C | 614 | C | 615 | A | 616 | G | 617 | * | C | 624 | G | 625 | G | 626 | U | 627 | A | 629 | U | 630 | U | 631 | C | 632 | cWW | cSW | tWH | tHS | ntWW | cWW | ||
| 5 | ➜ | 4V88 | 0.2193 | 1 | A6 | SSU rRNA | G | 562 | U | 563 | G | 564 | C | 565 | C | 566 | A | 567 | G | 568 | * | C | 575 | G | 576 | G | 577 | U | 578 | A | 580 | U | 581 | U | 582 | C | 583 | cWW | cSW | tWH | tHS | ntWW | cWW | ||
| 6 | ➜ | 3J9M | 0.2942 | 1 | AA | SSU rRNA | G | 887 | U | 888 | G | 889 | C | 890 | C | 891 | A | 892 | G | 893 | * | C | 900 | G | 901 | G | 902 | U | 903 | A | 905 | C | 906 | A | 907 | C | 908 | cWW | cSW | ntWH | tHS | ntWW | cWW | ||
| 7 | ➜ | 1FJG | 0.3219 | 1 | A | SSU rRNA | G | 515 | U | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | U | 534 | A | 535 | C | 536 | cWW | cSW | tWH | tHS | ntWW | cWW | ||
| 8 | ➜ | 4V4Q | 0.3231 | 1 | CA | SSU rRNA | G | 515 | U | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | U | 534 | A | 535 | C | 536 | cWW | tWH | tHS | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGCCAG*CGGUAAUUC | 5 |
| GUGCCAG*CGGUAAUAC | 2 |
| GUGCCAG*CGGUCACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCCA*GGUAAUU | 5 |
| UGCCA*GGUAAUA | 2 |
| UGCCA*GGUCACA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-tWH-cSW-L-R-R-L-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.21 | Max 0.37
Coloring options: