#SLoop idPDBDiscAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-32-82-93-73-84-75-6
12ZJR0.6380 X LSU rRNAU616U617A618A619G620*C629G630G631A632G633cWWtHScWW
23V2F0.5349 A23S Ribosomal RNAU606U607A608A609G610*C618G619G620A621G622cWWntWHtHScWW
32QBG0.5184 B23S rRNAU606U607A608A609C610*G618G619G620A621G622cWWntWHtHScWW
41S720.5210 0 LSU rRNAC663U664A665A666C667*G679G680G681A682G683cWWntWHtHScWW
53U5F0.3672 618S rRNAA1719G1720A1721A1722U1723*A1678G1679G1680A1681U1682cWWntSWtHStHScWW
63DHS0.2697Triple shearedARNase P RNAC284G285A286A287G288*C297G298G299A300G301cWWcSHtSHntHStHScWW
72A640.2643Triple shearedAribonuclease P RNAC284G285A286A287G288*C297G298G299A300G301cWWtSHtHStHScWW
82A640.2106Triple shearedAribonuclease P RNAC378G379A380A381G382*C347G348G349A350G351cWWntSHtHStHScWW
92XZM0.2253 A18S RRNAG1672A1673A1674A1675A1676*U1649G1650G1651A1652C1653cWWntSHtHStHScWW
104A1B0.3020 126S RRNAU3217U3218A3219A3220C3221*G3189A3190G3191C3192G3193cWWntSHntHStHScWW
114FAW0.2391 AGroup II catalytic intron D1-D4-1C70U71A72A73C74*G113G114A115C116G117cWWntSHntHStHScWW
123V2F0.0000 A23S Ribosomal RNAC1882G1883A1884A1885C1886*G1856G1857G1858A1859G1860cWWtSHtHStHScWW
133U5H0.1944 525S rRNAU1645G1646A1647A1648U1649*A1806G1807G1808A1809A1810cWWtSHtHStHScWW
143IWN0.2754Triple shearedAC-di-GMP riboswitchC12A13A14A15C16*G31G32A33C34G35cWWntSHtHScWW
153UCZ0.3647 RRNA (92-MER)C22A23A24A25C26*G41G42A43C44G45cWWntSHtHScWW
162QBG0.2995 B23S rRNAU1720G1721A1722G1723G1724*U1736G1737G1738A1739G1740cWWtSHtHSntHScWW
172QBG0.3566 B23S rRNAU703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
183V2F0.3683 A23S Ribosomal RNAU703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
193U5H0.3886 525S rRNAU834G835A836A837G838*U855G856G857A858G859cWWtSHtHStHScWW
201S720.3553 0 LSU rRNAU794G795A796A797G798*U815G816G817A818A819cWWncSHtSHtHStHScWW
212QWY0.5350 ASAM-II riboswitchA46A47A48A49G50*C16G17U18A19U20cWWtSHntHWtHScWW
222ZJR0.2967 X LSU rRNAC1865G1866A1867A1868A1869*U1848G1849G1850A1851G1852cWWtSHntHSntHScWW
231S720.3261 0 LSU rRNAC2515G2516A2517C2518C2519*G2501C2502A2503A2504G2505cWWtSHtHScWW
242AW70.4247 A16S ribosomal RNAC1259G1260A1261C1262C1263*G1272C1273A1274A1275G1276cWWtSHtHScWW
251U6B0.3611Triple shearedB197-MERG56A57A58A59C60*G84C85A86A87C88cWWtSHtHScWW
263V2F0.4055 A23S Ribosomal RNAC2480G2481G2482C2483G2484*C2466C2467G2468A2469G2470cWWtSHntHScWW
272ZJR0.4183 X LSU rRNAC2459G2460G2461C2462G2463*C2445C2446G2447A2448G2449cWWtSHntHScWW
284A1B0.3828 126S RRNAC2837G2838A2839C2840G2841*C2823C2824A2825A2826G2827cWWtSHtHScWW
292QBG0.3912 B23S rRNAC2480G2481A2482C2483G2484*C2466C2467A2468A2469G2470cWWtSHtHScWW
303U5H0.4665 525S rRNAC2849G2850A2851C2852A2853*U2835C2836A2837A2838G2839cWWtSHtHScWW
312XZM0.5249 A18S RRNAU525U526A527G528C529*G509A510A511C512A513cWWncWWntSHtHSncWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAG*CGGAG3
UGAAG*UGGAG3
CAAAC*GGACG2
CGACG*CCAAG2
CGACC*GCAAG2
UUAAG*CGGAG2
CGAAA*UGGAG1
CCGAG*CGGCG1
GAACA*UUAGC1
CGACA*UCAAG1
CGGCG*CCGAG1
AAAAG*CGUAU1
GAAAC*GCAAC1
UGAGG*UGGAG1
AGGAU*AGAAU1
CUAAC*GGGAG1
UUAAC*GGGAG1
UGGAC*GAAAA1
UUAAC*GAGCG1
UGAAU*AGGAA1
GGGAG*CGAAC1
CUAAC*GGACG1
UGAAG*UGGAA1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*GGA9
GAC*CAA5
UAA*GGA4
AAA*GAC2
GGA*GAA2
AAA*CAA1
CGA*GGC1
GGC*CGA1
AAC*UAG1
AAA*GUA1
UAA*GAC1
GGA*AAA1
GAG*GGA1
UAA*AGC1
Annotations
  • Triple sheared (5)
  • Basepair signature
    cWW-tSH-tHS-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.46 | Max 0.80
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