IL_87904.5

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-7	3-8	4-7	5-6	7-8
1	IL_2QWY_001➜	2QWY	0.5350		A	SAM-II riboswitch	C	16	G	17	U	18	A	19	U	20	*	A	46	A	47	A	48	A	49	G	50	cWW	tSH		ntWH	tHS	cWW
2	IL_4BPP_028➜	4BPP	0.5342		A	18S RRNA	G	509	A	510	A	511	C	512	A	513	*	U	525	U	526	A	527	G	528	C	529	cWW	ncSW	ncWW	tSH	ntHS	cWW
3	IL_3U5H_112➜	3U5H	0.4665		5	25S rRNA	U	2835	C	2836	A	2837	A	2838	G	2839	*	C	2849	G	2850	A	2851	C	2852	A	2853	cWW			tSH	tHS	cWW
4	IL_2QBG_094➜	2QBG	0.3912		B	23S rRNA	C	2466	C	2467	A	2468	A	2469	G	2470	*	C	2480	G	2481	A	2482	C	2483	G	2484	cWW			tSH	tHS	cWW
5	IL_4A1B_110➜	4A1B	0.3828		1	26S RRNA	C	2823	C	2824	A	2825	A	2826	G	2827	*	C	2837	G	2838	A	2839	C	2840	G	2841	cWW			tSH	tHS	cWW
6	IL_4IOA_089➜	4IOA	0.4062	Triple sheared	X	LSU rRNA	C	2445	C	2446	G	2447	A	2448	G	2449	*	C	2459	G	2460	G	2461	C	2462	G	2463	cWW			ntSH	tHS	cWW
7	IL_3V2F_092➜	3V2F	0.4055		A	23S Ribosomal RNA	C	2466	C	2467	G	2468	A	2469	G	2470	*	C	2480	G	2481	G	2482	C	2483	G	2484	cWW			ntSH	tHS	cWW
8	IL_1U6B_002➜	1U6B	0.3611	Triple sheared	B	197-MER	G	84	C	85	A	86	A	87	C	88	*	G	56	A	57	A	58	A	59	C	60	cWW			tSH	tHS	cWW
9	IL_1S72_083➜	1S72	0.3261		0	LSU rRNA	G	2501	C	2502	A	2503	A	2504	G	2505	*	C	2515	G	2516	A	2517	C	2518	C	2519	cWW			tSH	tHS	cWW
10	IL_2AW7_058➜	2AW7	0.4247		A	16S ribosomal RNA	G	1272	C	1273	A	1274	A	1275	G	1276	*	C	1259	G	1260	A	1261	C	1262	C	1263	cWW			tSH	tHS	cWW
11	IL_3U5F_091➜	3U5F	0.3672		6	18S rRNA	A	1678	G	1679	G	1680	A	1681	U	1682	*	A	1719	G	1720	A	1721	A	1722	U	1723	cWW	tSH		tSH	ntWS	cWW
12	IL_1S72_028➜	1S72	0.3553		0	LSU rRNA	U	815	G	816	G	817	A	818	A	819	*	U	794	G	795	A	796	A	797	G	798	cWW	tSH		tSH	tHS	cWW	ncSH
13	IL_3U5H_032➜	3U5H	0.3886		5	25S rRNA	U	855	G	856	G	857	A	858	G	859	*	U	834	G	835	A	836	A	837	G	838	cWW	tSH		tSH	tHS	cWW
14	IL_3V2F_021➜	3V2F	0.3683		A	23S Ribosomal RNA	U	724	G	725	G	726	A	727	G	728	*	U	703	G	704	A	705	A	706	G	707	cWW	tSH		tSH	tHS	cWW
15	IL_2QBG_024➜	2QBG	0.3566		B	23S rRNA	U	724	G	725	G	726	A	727	G	728	*	U	703	G	704	A	705	A	706	G	707	cWW	tSH		tSH	tHS	cWW
16	IL_2QBG_068➜	2QBG	0.2995		B	23S rRNA	U	1736	G	1737	G	1738	A	1739	G	1740	*	U	1720	G	1721	A	1722	G	1723	G	1724	cWW	ntSH		tSH	tHS	cWW
17	IL_4BPP_090➜	4BPP	0.2332		A	18S RRNA	U	1649	G	1650	G	1651	A	1652	C	1653	*	G	1672	A	1673	A	1674	A	1675	A	1676	cWW	tSH		tSH	tHS	cWW
18	IL_2A64_005➜	2A64	0.2643	Triple sheared	A	ribonuclease P RNA	C	297	G	298	G	299	A	300	G	301	*	C	284	G	285	A	286	A	287	G	288	cWW	tSH		tSH	tHS	cWW
19	IL_3DHS_004➜	3DHS	0.2697	Triple sheared	A	RNase P RNA	C	297	G	298	G	299	A	300	G	301	*	C	284	G	285	A	286	A	287	G	288	cWW	tSH		ntSH	tHS	cWW	cSH
20	IL_2A64_006➜	2A64	0.2106	Triple sheared	A	ribonuclease P RNA	C	347	G	348	G	349	A	350	G	351	*	C	378	G	379	A	380	A	381	G	382	cWW	tSH		tSH	ntHS	cWW
21	IL_4IOA_070➜	4IOA	0.1630	Triple sheared	X	LSU rRNA	U	1848	G	1849	G	1850	A	1851	G	1852	*	C	1865	G	1866	A	1867	A	1868	A	1869	cWW	tSH		tSH	ntHS	cWW
22	IL_3V2F_072➜	3V2F	0.0000		A	23S Ribosomal RNA	G	1856	G	1857	G	1858	A	1859	G	1860	*	C	1882	G	1883	A	1884	A	1885	C	1886	cWW	tSH		tSH	tHS	cWW
23	IL_3U5H_075➜	3U5H	0.1944		5	25S rRNA	A	1806	G	1807	G	1808	A	1809	A	1810	*	U	1645	G	1646	A	1647	A	1648	U	1649	cWW	tSH		tSH	tHS	cWW
24	IL_3IWN_002➜	3IWN	0.2754	Triple sheared	A	C-di-GMP riboswitch	G	31	G	32	A	33	C	34	G	35	*	C	12	A	13	A	14	A	15	C	16	cWW	tSH			ntHS	cWW
25	IL_4FAW_002➜	4FAW	0.2391		A	Group II catalytic intron D1-D4-1	G	113	G	114	A	115	C	116	G	117	*	C	70	U	71	A	72	A	73	C	74	cWW	tSH		ntSH	ntHS	cWW
26	IL_4A1B_125➜	4A1B	0.3020		1	26S RRNA	G	3189	A	3190	G	3191	C	3192	G	3193	*	U	3217	U	3218	A	3219	A	3220	C	3221	cWW	tSH		ntSH	ntHS	cWW
27	IL_3UCZ_001➜	3UCZ	0.3647		R	RNA (92-MER)	G	41	G	42	A	43	C	44	G	45	*	C	22	A	23	A	24	A	25	C	26	cWW	tSH			ntHS	cWW
28	IL_1S72_021➜	1S72	0.5210		0	LSU rRNA	G	679	G	680	G	681	A	682	G	683	*	C	663	U	664	A	665	A	666	C	667	cWW	tSH			ntHW	cWW
29	IL_2QBG_019➜	2QBG	0.5184		B	23S rRNA	G	618	G	619	G	620	A	621	G	622	*	U	606	U	607	A	608	A	609	C	610	cWW	tSH			ntHW	cWW
30	IL_3V2F_016➜	3V2F	0.5349		A	23S Ribosomal RNA	C	618	G	619	G	620	A	621	G	622	*	U	606	U	607	A	608	A	609	G	610	cWW	tSH			ntHW	cWW
31	IL_4IOA_012➜	4IOA	0.6538	AAA cross-strand stack	X	LSU rRNA	C	629	G	630	G	631	A	632	G	633	*	U	616	U	617	A	618	A	619	G	620	cWW	tSH				cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGGAG*CGAAG	3
UGGAG*UGAAG	2
GGACG*CAAAC	2
CCGAG*CGGCG	2
GCAAG*CGACC	2
CCAAG*CGACG	2
UUAAG*CGGAG	1
AGGAA*UGAAU	1
CGGAG*UUAAG	1
GGACG*CUAAC	1
GGGAG*UUAAC	1
GGGAG*CUAAC	1
GAGCG*UUAAC	1
GGGAG*CGAAC	1
UGGAG*UGAGG	1
GCAAC*GAAAC	1
UCAAG*CGACA	1
GAACA*UUAGC	1
AGGAU*AGAAU	1
UGGAA*UGAAG	1
UGGAC*GAAAA	1
CGUAU*AAAAG	1
UGAAG*UGGAG	1
UGGAG*CGAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGA*GAA	10
CAA*GAC	5
GGA*UAA	3
CGA*GGC	2
GAC*AAA	2
GAC*UAA	1
UAA*GGA	1
AGC*UAA	1
GAA*GGA	1
AAC*UAG	1
CAA*AAA	1
GUA*AAA	1
GGA*GAG	1
GGA*AAA	1

Release history

Release	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13
Date	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_87904.5	Only in the parent motif
IL_87904.4 Compare	IL_2AW7_058, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_3V2F_021, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2QBG_019, IL_1S72_021, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_2QBG_024, IL_3V2F_092, IL_1U6B_002, IL_2QBG_094, IL_3V2F_072, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4IOA_012, IL_3V2F_016, IL_3DHS_004	IL_4BPP_028, IL_4BPP_090	IL_2XZM_092, IL_2XZM_027

Children motifs

Child motif	Common motif instances	Only in IL_87904.5	Only in the child motif
IL_87904.6 Compare	IL_4BPP_028, IL_2AW7_058, IL_4IOA_012, IL_4A1B_110, IL_4IOA_070, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2QBG_019, IL_1S72_021, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_4BPP_090, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_1S72_083, IL_3DHS_004	IL_3V2F_072, IL_3V2F_092, IL_3V2F_021, IL_3V2F_016	IL_1VW3_083, IL_4NVV_075, IL_4NVV_023, IL_4NVV_091, IL_4NVV_017

Motif IL_87904.5 Version IL_87904.5 of this group appears in releases 1.5 to 1.13 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_87904.5 Version IL_87904.5 of this group appears in releases 1.5 to 1.13

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