Motif IL_99283.1 Version IL_99283.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8		9	1-9	2-6	2-8	2-9	3-6	3-7	4-5	6-7	6-8
1	IL_3J7A_071➜	3J7A	0.3494	0		A	SSU rRNA	G	1935	C	1936	C	1937	C	1938	*	G	2052	U	2053	A	2054	A	2055	C	2056	cWW		cWW		ncWH	cSW	cWW
2	IL_3JAM_076➜	3JAM	0.3481	0		2	SSU rRNA	G	1636	C	1637	C	1638	C	1639	*	G	1758	U	1759	A	1760	A	1761	C	1762	cWW		cWW		ncWH	cSW	cWW
3	IL_3J7P_226➜	3J7P	0.1549	0		S2	SSU rRNA	G	1702	C	1703	C	1704	C	1705	*	G	1829	U	1830	A	1831	A	1832	C	1833	cWW		ncWW			cSW	cWW	cSH	ncSH
4	IL_3J9M_100➜	3J9M	0.1370	0		AA	SSU rRNA	G	1485	C	1486	C	1487	C	1488	*	G	1562	U	1563	A	1564	A	1565	C	1566	cWW		cWW			cSW	cWW	cSH	ncSH
5	IL_5AJ3_037➜	5AJ3	0.1031	0		A	SSU rRNA	G	845	C	846	C	847	C	848	*	G	923	U	924	A	925	A	926	C	927	cWW		cWW			cSW	cWW	cSH
6	IL_5A2Q_080➜	5A2Q	0.1100	0		2	SSU rRNA	G	1702	C	1703	C	1704	C	1705	*	G	1829	U	1830	A	1831	A	1832	C	1833	cWW		ncWW	ncWW		cSW	cWW	cSH
7	IL_4V88_464➜	4V88	0.0000	0		A6	SSU rRNA	G	1638	C	1639	C	1640	C	1641	*	G	1760	U	1761	A	1762	A	1763	C	1764	cWW		cWW			cSW	cWW	cSH
8	IL_4V4Q_238➜	4V4Q	0.0910	0		CA	SSU rRNA	G	1401	C	1402	C	1403	C	1404	*	G	1497	U	1498	A	1499	A	1500	C	1501	cWW		cWW			cSW	cWW	cSH
9	IL_1FJG_055➜	1FJG	0.0920	0		A	SSU rRNA	G	1401	C	1402	C	1403	C	1404	*	G	1497	U	1498	A	1499	A	1500	C	1501	cWW		cWW			cSW	cWW	cSH
10	IL_4BTS_340➜	4BTS	0.1001	0		DA	SSU rRNA	G	1610	C	1611	C	1612	C	1613	*	G	1713	U	1714	A	1715	A	1716	C	1717	cWW		cWW			cSW	cWW	cSH
11	IL_3J9W_053➜	3J9W	0.1358	0		AA	SSU rRNA	G	1410	C	1411	C	1412	C	1413	*	G	1507	U	1508	A	1509	A	1510	C	1511	cWW		cWW			cSW	cWW	cSH
12	IL_3LOA_001➜	3LOA	0.6996	0	UAA/GAN variation	A+B	RNA (21-mer) + RNA (23-mer)	G	1401	C	1402	C	1403	C	1404	*	G	1497	U	1498	A	1499	A	1500	C	1501	cWW	ntHS			ncWS	ntSH	cWW
13	IL_3BNT_002➜	3BNT	0.8054	0	Tandem non-canonical cWW pairs	A	A site of human mitochondrial ribosome	C	6	A	7	C	8	C	9	*	G	14\|\|\|\|4_665	C	15\|\|\|\|4_665	A	16\|\|\|\|4_665	A	17\|\|\|\|4_665	G	18\|\|\|\|4_665	cWW		cWW				cWW
14	IL_3BNT_005➜	3BNT	0.8054	0	Tandem non-canonical cWW pairs	A	A site of human mitochondrial ribosome	C	6\|\|\|\|4_665	A	7\|\|\|\|4_665	C	8\|\|\|\|4_665	C	9\|\|\|\|4_665	*	G	14	C	15	A	16	A	17	G	18	cWW		cWW				cWW
15	IL_1FJG_008➜	1FJG	0.7013	0		A	SSU rRNA	G	227	A	228	U	229	G	230	*	C	132	U	133	A	134	C	135	C	136	cWW				cWW	ntSH	cWW
16	IL_4V4Q_187➜	4V4Q	0.7341	0		CA	SSU rRNA	G	227	A	228	U	229	G	230	*	C	132	U	133	G	134	C	135	C	136	cWW				cWW		cWW
17	IL_3J9W_009➜	3J9W	0.6993	0		AA	SSU rRNA	G	235	A	236	U	237	G	238	*	C	131	U	132	G	133	C	134	C	135	cWW				cWW		cWW
18	IL_3J79_125➜	3J79	0.7816	2		A	LSU rRNA	G	3719	G	3720	U	3721	G	3722	*	C	3765	U	3766	U	3767	C	3770	C	3771	cWW		ncWW		cWW		cWW
19	IL_2O3V_002➜	2O3V	0.8985	0	Decoding loop related	A+B	RNA (23-mer)	C	7	G	8	C	9	U	10	*	A	38	A	39	A	40	A	41	G	42	cWW				ncWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCCC*GUAAC	12
GAUG*CUGCC	2
CACC*GCAAG	2
CGCU*AAAAG	1
GAUG*CUACC	1
GGUG*CUUAUCC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CC*UAA	12
AU*UGC	2
AC*CAA	2
GC*AAA	1
AU*UAC	1
GU*UUAUC	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Tandem non-canonical cWW pairs (2)
UAA/GAN variation (1)
Decoding loop related (1)
Basepair signature: cWW-cWW-cSW-cWW-cSH-cWW
Heat map statistics: Min 0.07 | Avg 0.51 | Max 0.98

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Coloring options: Nucleotide numbers

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