1NBS Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1NBS_002 | 1/A/118:125 | No text annotation Not in a motif group | geometric HL_7RQB_022 HL_84085.2 | |
| HL_1NBS_006 | 1/B/152:157 | UNCG HL_03562.2 | ||
| HL_1NBS_007 | 1/B/204:209 | GNRA HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1NBS_001 | No text annotation | ||
| HL_1NBS_003 | No text annotation | ||
| HL_1NBS_004 | No text annotation | ||
| HL_1NBS_005 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1NBS_001 | 1/A/113:114, 1/A/129:131 | Single bulged A Not in a motif group | homologous IL_1NBS_005 IL_37497.2 | |
| IL_1NBS_002 | 1/A/181:182, 1/A/228:231 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_1NBS_009 IL_69996.1 | |
| IL_1NBS_003 | 1/A/184:197, 1/A/216:226 | No text annotation Not in a motif group | geometric IL_1NBS_010 IL_84409.1 | |
| IL_1NBS_005 | 1/B/113:114, 1/B/129:131 | Single bulged A IL_37497.2 | ||
| IL_1NBS_006 | 1/B/116:118, 1/B/125:127 | No text annotation IL_95997.1 | ||
| IL_1NBS_007 | 1/B/138:143, 1/B/165:171 | 7x6 Sarcin-Ricin; G-bulge IL_76042.2 | ||
| IL_1NBS_008 | 1/B/146:150, 1/B/159:162 | Receptor of 11-nt loop-receptor motif IL_53448.1 | ||
| IL_1NBS_009 | 1/B/181:182, 1/B/228:231 | Major groove outside cWW, minor groove, intercalation pocket IL_69996.1 | ||
| IL_1NBS_010 | 1/B/184:197, 1/B/216:226 | No text annotation IL_84409.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1NBS_004 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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