Motif HL_01962.1 Version HL_01962.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_157 | 8P9A | 0.1667 | 4 | AR | LSU rRNA | U | 2135 | C | 2136 | U | 2137 | U | 2141 | A | 2142 | A | 2143 | A | 2145 | cWW | tWH | tWH |
| 2 | HL_4WF9_043 | 4WF9 | 0.0844 | 4 | X | LSU rRNA | U | 1804 | U | 1805 | U | 1806 | A | 1810 | A | 1811 | A | 1812 | A | 1814 | cWW | tWH | |
| 3 | HL_4V9F_047 | 4V9F | 0.0822 | 4 | 0 | LSU rRNA | U | 1833 | C | 1834 | U | 1835 | A | 1839 | A | 1840 | C | 1841 | A | 1843 | cWW | tWH | tWH |
| 4 | HL_5J7L_178 | 5J7L | 0.0000 | 4 | DA | LSU rRNA | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | tWH |
| 5 | HL_9DFE_043 | 9DFE | 0.0746 | 4 | 1A | LSU rRNA | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAUUAAAA | 1 |
| UUUAUCAAAAA | 1 |
| UCUAGUAACAA | 1 |
| UUUAUUAAAAA | 1 |
| UUUACCAAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAAUUAAA | 1 |
| UUAUCAAAA | 1 |
| CUAGUAACA | 1 |
| UUAUUAAAA | 1 |
| UUACCAAAA | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tWH-tWH-F
- Heat map statistics
- Min 0.07 | Avg 0.10 | Max 0.20
Coloring options: