Motif HL_02361.5 Version HL_02361.5 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_074 | 5TBW | 0.6216 | 0 | Other HL | 4 | 5.8S rRNA | U | 73 | U | 74 | G | 75 | C | 76 | A | 77 | G | 78 | ncWW | |
| 2 | HL_7A0S_004 | 7A0S | 0.6872 | 0 | X | LSU rRNA | C | 133 | G | 134 | U | 135 | A | 136 | A | 137 | G | 138 | cWW | ||
| 3 | HL_5VSU_001 | 5VSU | 0.6227 | 0 | I | U6 snRNA | U | 70 | G | 71 | C | 72 | A | 73 | U | 74 | A | 75 | cWW | ||
| 4 | HL_5LM7_001 | 5LM7 | 0.2595 | 1 | GNRA with one bulged base | G | RNA (29-MER) | U | 21 | G | 22 | A | 23 | A | 24 | A | 26 | A | 27 | cWW | ntSH |
| 5 | HL_4AL5_001 | 4AL5 | 0.2593 | 1 | GNRA with one bulged base | B | RNA (20-mer) | C | 10 | G | 11 | U | 12 | A | 13 | A | 15 | G | 16 | cWW | tSH |
| 6 | HL_2XLK_001 | 2XLK | 0.2050 | 1 | GNRA with one bulged base | C | RNA (16-mer) | C | 10 | G | 11 | U | 12 | A | 13 | A | 15 | G | 16 | cWW | tSH |
| 7 | HL_5O7H_001 | 5O7H | 0.1278 | 1 | GNRA with one bulged base | A | crRNA | C | 32 | G | 33 | C | 34 | A | 35 | A | 37 | G | 38 | cWW | ntSH |
| 8 | HL_6VMY_001 | 6VMY | 0.0000 | 1 | A | Cobalamin riboswitch | U | 223 | G | 224 | A | 225 | A | 226 | A | 228 | A | 229 | cWW | ntSH | |
| 9 | HL_5J7L_174 | 5J7L | 0.1507 | 1 | GNRA with one bulged base | DA | LSU rRNA | A | 1630 | G | 1631 | A | 1632 | G | 1633 | A | 1635 | U | 1636 | cWW | tSH |
| 10 | HL_1XJR_001 | 1XJR | 0.2129 | 1 | GNRA with one bulged base | A | s2m RNA | G | 21 | G | 22 | A | 23 | G | 24 | A | 26 | C | 27 | cWW | tSH |
| 11 | HL_4Y4O_123 | 4Y4O | 0.1690 | 1 | GNRA with one bulged base | 2A | LSU rRNA | C | 641 | G | 642 | A | 643 | A | 644 | A | 646 | G | 647 | cWW | tSH |
| 12 | HL_4WF9_021 | 4WF9 | 0.2947 | 1 | GNRA with one bulged base | X | LSU rRNA | U | 686 | G | 687 | A | 688 | A | 689 | A | 691 | G | 692 | cWW | ntSH |
| 13 | HL_4V9F_016 | 4V9F | 0.3348 | 1 | GNRA with one bulged base | 0 | LSU rRNA | U | 493 | C | 494 | A | 495 | G | 496 | A | 498 | G | 499 | cWW | ntSH |
| 14 | HL_5TBW_042 | 5TBW | 0.2914 | 1 | GNRA with one bulged base | 1 | LSU rRNA | U | 1862 | G | 1863 | A | 1864 | A | 1865 | A | 1867 | G | 1868 | cWW | tSH |
| 15 | HL_3D0U_003 | 3D0U | 0.4985 | 1 | GNRA with one bulged base | A | Lysine Riboswitch RNA | G | 121 | G | 122 | A | 123 | A | 124 | A | 126 | C | 127 | cWW | tSH |
| 16 | HL_7A0S_046 | 7A0S | 0.5650 | 1 | X | LSU rRNA | C | 1797 | G | 1798 | A | 1799 | A | 1800 | A | 1802 | G | 1803 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAUAG | 2 |
| CGAACAG | 2 |
| UUGCAG | 1 |
| CGUAAG | 1 |
| UGCAUA | 1 |
| UGAAGAA | 1 |
| CGCACAG | 1 |
| UGAACAA | 1 |
| AGAGAAU | 1 |
| GGAGUAC | 1 |
| UGAAUAG | 1 |
| UCAGAAG | 1 |
| UGAACAG | 1 |
| GGAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAACA | 4 |
| GUAUA | 2 |
| GAAUA | 2 |
| UGCA | 1 |
| GUAA | 1 |
| GCAU | 1 |
| GAAGA | 1 |
| GCACA | 1 |
| GAGAA | 1 |
| GAGUA | 1 |
| CAGAA | 1 |
- Annotations
-
- GNRA with one bulged base (11)
- Other HL (1)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.12 | Avg 0.44 | Max 0.93
Coloring options: