#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 71-7
1 HL_4QLM_0024QLM0.30123Pseudoknot geometryA cyclic di-AMP riboswitchU72C76C77U78U79C80G81cWW
2 HL_5TBW_0095TBW0.35963Pseudoknot geometry1 LSU rRNAG303A307A308U309U310C311C312cWW
3 HL_8C3A_0098C3A0.32973Pseudoknot geometry1 LSU rRNAG303A307A308U309U310C311C312cWW
4 HL_4ENC_0014ENC0.31923Pseudoknot geometryAFluoride riboswitchG5A9G10G11C12C13C14cWW
5 HL_1ZCI_0021ZCI0.22064Pseudoknot geometryBRNA (23-mer)G7G12C13A14C15A16C17cWW
6 HL_1ZCI_0011ZCI0.19664Pseudoknot geometryARNA (23-mer)G7G12C13A14C15A16C17cWW
7 HL_3G9C_0073G9C0.23962Pseudoknot geometryQGLMS RIBOZYMEG71C74A75U76C77A78C79cWW
8 HL_4V9F_0614V9F0.17802Pseudoknot geometry0 LSU rRNAG2442U2445G2446A2447U2448G2449C2450cWW
9 HL_4V9F_0144V9F0.16152Pseudoknot geometry0 LSU rRNAG416A419U420C421G422A423C424cWW
10 HL_3HHN_0093HHN0.00001Pseudoknot geometryEClass I ligase ribozyme, self-ligation productG75G77G78C79A80G81C82cWW
11 HL_3IVK_0043IVK0.10321Pseudoknot geometryMclass I ligase productG75G77G78C79A80G81C82cWW
12 HL_5K7D_0015K7D0.18061Pseudoknot geometryARNA 47-MERG5U7A8G9G10G11C12cWW
13 HL_6UFJ_0036UFJ0.19601Pseudoknot geometryCRNA (50-MER)G5U7U8G9A10G11C12cWW
14 HL_6UEY_0036UEY0.20451Pseudoknot geometryCPistol ribozymeG5U7U8G9A10G11C12cWW
15 HL_6R47_0016R470.22541Pseudoknot geometryARNA (50-MER)G6U8C9G10G11G12C13cWW
16 HL_5KTJ_0015KTJ0.20471Pseudoknot geometryAPistol (50-MER)G5U7U8G9A10G11C12cWW
17 HL_2JLT_0022JLT0.23511Pseudoknot geometryBTARC5U7G8G9G10A11G12cWW
18 HL_4FRN_0064FRN0.27901Pseudoknot geometryBCobalamin riboswitch aptamer domainU44A46C47U48U49G50A51cWW
19 HL_5J7L_1895J7L0.48841Pseudoknot geometryDA LSU rRNAU2324C2326A2327A2328U2329G2330G2331cWW
20 HL_7A0S_0557A0S0.44271Pseudoknot geometryX LSU rRNAC2303C2305A2306A2307A2308G2309G2310cWW
21 HL_4WF9_0524WF90.47641Pseudoknot geometryX LSU rRNAU2351U2353A2354A2355A2356G2357G2358ncWW
22 HL_8VTW_0558VTW0.37851Pseudoknot geometry1A LSU rRNAC2324C2326A2327A2328G2329G2330G2331cWW
23 HL_5TBW_0575TBW0.41401Pseudoknot geometry1 LSU rRNAC2693A2695A2696A2697G2698G2699G2700cWW
24 HL_8C3A_0588C3A0.39831Pseudoknot geometry1 LSU rRNAC2665A2667A2668A2669G2670G2671G2672cWW
25 HL_4V9F_0584V9F0.44241Pseudoknot geometry0 LSU rRNAU2358C2360A2361A2362G2363A2364G2365cWW
26 HL_3SKL_0053SKL0.51991Pseudoknot geometryBRNA (66-MER)G52C54C55C56C57G58C59cWW
27 HL_3SKI_0023SKI0.48701Pseudoknot geometryARNA (68-MER)G53C55C56C57C58G59C60cWW
28 HL_7KGA_0037KGA0.64393Pseudoknot geometryBFlavivirus DB elementU22A25C27C28U29A30G31cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUUUGAGC3
GGUAAAUUCC2
GAAGUGCACAC2
GUGGCAGC2
CAAAAGGG2
GACCCCGC2
UACUCCUUCG1
GAUGAGGCCC1
GUUCAUCAC1
GCUUGAUGC1
GGCAUCGAC1
GUUAGGGC1
GUUCGGGC1
CCUGGGAG1
UUACUUGA1
UGCAAUGG1
CGCAAAGG1
UGUAAAGG1
CGCAAGGG1
UGCAAGAG1
UCAAGCCUAG1
Non-Watson-Crick part of the motif
SequenceCounts
UUUGAG3
GUAAAUUC2
AAGUGCACA2
UGGCAG2
AAAAGG2
ACCCCG2
ACUCCUUC1
AUGAGGCC1
UUCAUCA1
CUUGAUG1
GCAUCGA1
UUAGGG1
UUCGGG1
CUGGGA1
UACUUG1
GCAAUG1
GCAAAG1
GUAAAG1
GCAAGG1
GCAAGA1
CAAGCCUA1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Pseudoknot geometry (28)
  • Basepair signature
    cWW-F-F-F-F-F
    Heat map statistics
    Min 0.07 | Avg 0.45 | Max 0.87
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