Motif HL_20811.2 Version HL_20811.2 of this group appears in releases 3.90 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5DO4_001 | 5DO4 | 0.6568 | 1 | Other HL | A | RNA (25-MER) | CFZ | 11 | UMS | 12 | G | 13 | A | 15 | G | 16 | cWW | cWS |
| 2 | HL_1FIR_004 | 1FIR | 0.2300 | 5 | tRNA D-loop | A | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | cWS |
| 3 | HL_8SP9_001 | 8SP9 | 0.2207 | 5 | tRNA D-loop | C | Enterovirus 5' cloverleaf cis-acting replication element | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ncWS |
| 4 | HL_7LYF_001 | 7LYF | 0.1964 | 5 | tRNA D-loop | A | Dengue virus SLA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ncWS |
| 5 | HL_7MRL_001 | 7MRL | 0.1111 | 5 | tRNA D-loop | A | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ncWS |
| 6 | HL_1QF6_001 | 1QF6 | 0.0000 | 5 | tRNA D-loop | B | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | cWS |
| 7 | HL_5AXM_001 | 5AXM | 0.1407 | 5 | tRNA D-loop | P | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ncWS |
| 8 | HL_5B63_003 | 5B63 | 0.1946 | 6 | tRNA D-loop | D | tRNA | C | 913 | A | 914 | A | 915 | A | 922 | G | 923 | cWW | ncWS |
| 9 | HL_3AL0_001 | 3AL0 | 0.2269 | 4 | tRNA D-loop | E | tRNA | U | 13 | A | 14 | A | 15 | A | 21 | G | 22 | cWW | cWS |
| 10 | HL_3AKZ_010 | 3AKZ | 0.3432 | 4 | tRNA D-loop | E | tRNAGln | U | 13 | A | 14 | A | 15 | A | 21 | G | 22 | cWW | cWS |
| 11 | HL_2AZX_004 | 2AZX | 0.2169 | 4 | tRNA D-loop | D | 72-MER | C | 513 | A | 514 | A | 515 | A | 521 | G | 522 | cWW | cWS |
| 12 | HL_6JXM_001 | 6JXM | 0.2238 | 4 | tRNA D-loop | B | tRNA | C | 13 | A | 14 | G | 15 | A | 20 | G | 21 | cWW | ncWS |
| 13 | HL_4V90_032 | 4V90 | 0.2414 | 5 | tRNA D-loop | AV | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ncWS |
| 14 | HL_7UQ6_001 | 7UQ6 | 0.3245 | 4 | tRNA D-loop | B | tRNA | C | 13 | A | 14 | G | 15 | A | 20 | G | 21 | cWW | |
| 15 | HL_7EQJ_004 | 7EQJ | 0.3495 | 5 | tRNA D-loop | B | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | |
| 16 | HL_4V9K_033 | 4V9K | 0.4493 | 6 | tRNA D-loop | AW | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | |
| 17 | HL_4WT8_135 | 4WT8 | 0.3803 | 5 | tRNA D-loop | C3 | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUCGGUAG | 4 |
| UAACGGUAG | 2 |
| CAGUGGUAG | 2 |
| (CFZ)(UMS)GAAG | 1 |
| CAG(H2U)CGG(H2U)AG | 1 |
| CAGGGAG | 1 |
| CAGUUGGGAG | 1 |
| CAAUUGGAUAG | 1 |
| CAAUGGUAG | 1 |
| CAGCCGGUAG | 1 |
| CAGCUGGGAG | 1 |
| CAGUUGGUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUCGGUA | 4 |
| AACGGUA | 2 |
| AGUGGUA | 2 |
| (UMS)GAA | 1 |
| AG(H2U)CGG(H2U)A | 1 |
| AG(H2U)(H2U)GG(H2U)A | 1 |
| AGUUGGGA | 1 |
| AAUUGGAUA | 1 |
| AAUGGUA | 1 |
| AGCCGGUA | 1 |
| AGCUGGGA | 1 |
| AGUUGGUUA | 1 |
- Annotations
-
- tRNA D-loop (16)
- Other HL (1)
- Basepair signature
- cWW-cWS-F
- Heat map statistics
- Min 0.11 | Avg 0.36 | Max 0.98
Coloring options: