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Motif HL_22584.5 Version HL_22584.5 of this group appears in releases 3.95 to 3.97

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-52-32-4
1 HL_3IGI_0093IGI0.60401Other HLAGroup IIC intronC368G369A371C372G373cWWtSW
2 HL_9DFE_0639DFE0.74571Other HL1A LSU rRNAC2701U2702C2704A2705G2706cWWcSH
3 HL_6OL3_0016OL30.58602Other HLC VA RNAG64A66C68C69C70cWWntSW
4 HL_8VMB_0018VMB0.13622Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG18A20C22A23C24cWWntSW
5 HL_8T29_0018T290.12902Fab BL3-6 binding hairpin with tSWRRNA (90-MER)G35A37C39A40C41cWWtSW
6 HL_8DP3_0018DP30.11712Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG20A22C24A25C26cWWtSW
7 HL_8VMA_0038VMA0.16162Fab BL3-6 binding hairpin with tSWCEnterovirus 5' cloverleaf cis-acting replication elementG60A62C64A65C66cWWtSW
8 HL_7MLX_0027MLX0.13412Fab BL3-6 binding hairpin with tSWRRNA (65-MER)G40A42C44A45C46cWWtSW
9 HL_8D29_0018D290.09102Fab BL3-6 binding hairpin with tSWCRNA (34-MER)G13A15C17A18C19cWWtSW
10 HL_6X5M_0026X5M0.12012Fab BL3-6 binding hairpin with tSWrggPAN RNA (39-MER)G14A16C18A19C20cWWtSW
11 HL_7SZU_0017SZU0.14192Fab BL3-6 binding hairpin with tSWRRNA aptamerG35A37C39A40C41cWWtSW
12 HL_8UIW_0018UIW0.12782Fab BL3-6 binding hairpin with tSWNazaaromatic riboswitch aptamer (yjdF RNA)G29A31C33A34C35cWWtSW
13 HL_8DK7_0018DK70.06342Fab BL3-6 binding hairpin with tSWCRNA (34-MER)G13A15C17A18C19cWWtSW
14 HL_8VM9_0068VM90.05612Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG57A59C61A62C63cWWtSW
15 HL_8D29_0038D290.03782Fab BL3-6 binding hairpin with tSWJRNA (34-MER)G13A15C17A18C19cWWtSW
16 HL_8D29_0028D290.00002Fab BL3-6 binding hairpin with tSWFRNA (34-MER)G13A15C17A18C19cWWtSW
17 HL_6DB9_0016DB90.04212Fab BL3-6 binding hairpin with tSWRRNA (60-MER)G23A25C27A28C29cWWtSW
18 HL_8VM8_0038VM80.05262Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG63A65C67A68C69cWWtSW
19 HL_4KZD_0014KZD0.04892Fab BL3-6 binding hairpin with tSWRRNA (84-MER)G37A39C41A42C43cWWtSW
20 HL_9AUS_0029AUS0.07112Fab BL3-6 binding hairpin with tSWRLoop-closed dumbbell RNA bridged by glycineG5A7C9A10C11cWWtSW
21 HL_9DN4_0029DN40.06512FRNA (20-mer)G8A10C12A13C14cWWtSW
22 HL_3IVK_0033IVK0.08202Fab BL3-6 binding hairpin with tSWMclass I ligase productG59A61C63A64C65cWWtSW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAACAC19
CGAACG1
CUCCAG1
GAACCCC1
Non-Watson-Crick part of the motif
SequenceCounts
AAACA19
GAAC1
UCCA1
AACCC1

Release history

Release3.953.963.97
Date2025-03-262025-04-232025-05-21
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Fab BL3-6 binding hairpin with tSW (18)
  • Other HL (3)
  • (1)
    • Basepair signature
    cWW-tSW-F
    Heat map statistics
    Min 0.03 | Avg 0.24 | Max 0.77
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