HL_29031.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	1-4	2-3
1	HL_5DDO_003	5DDO	0.3113	2	GNRA with GA tSW pair	B	L-glutamine riboswitch (58-MER)	G	11	G	12	A	15	C	16	cWW
2	HL_5VW1_003	5VW1	0.2590	2	GNRA with GA tSW pair	C	sgRNA	U	72	G	73	A	76	A	77	cWW	ntsS
3	HL_4ZT0_006	4ZT0	0.2548	2	GNRA with GA tSW pair	D	single-guide RNA	U	72	G	73	A	76	A	77	cWW
4	HL_6MJ0_008	6MJ0	0.2095	2	GNRA with GA tSW pair	B	tRNA-like 3' UTR element	C	49	G	50	A	53	G	54	cWW
5	HL_6LAX_002	6LAX	0.2204	2		A	RNA (55-MER)	U	42	G	43	A	46	A	47	cWW	ntsS
6	HL_6UFG_005	6UFG	0.2626	2	GNRA	A	RNA (166-MER)	C	144	G	145	A	148	G	149	cWW
7	HL_6CZR_090	6CZR	0.2222	2	GNRA	1a	SSU rRNA	C	840	U	841	C	844	G	845	cWW	ntSH
8	HL_4OQU_004	4OQU	0.1387	2	GNRA	A	SAM-I/IV riboswitch	C	76	G	77	A	80	G	81	cWW
9	HL_6M0X_001	6M0X	0.1332	2		B	RNA (71-MER)	C	32	G	33	A	36	G	37	cWW
10	HL_4V88_207	4V88	0.0848	2	GNRA	A6	SSU rRNA	C	937	G	938	A	941	G	942	cWW
11	HL_8C3A_212	8C3A	0.0000	2	GNRA (H)	CM	SSU rRNA	C	922	G	923	A	926	G	927	cWW
12	HL_1G1X_005	1G1X	0.0978	2	GNRA	J	16S RIBOSOMAL RNA	C	726	G	727	G	730	G	731	cWW
13	HL_1G1X_003	1G1X	0.1469	2	GNRA	E	16S RIBOSOMAL RNA	C	726	G	727	G	730	G	731	cWW
14	HL_6SVS_001	6SVS	0.1227	2	GNRA	A	RNA (79-mer)	C	26	G	27	A	30	G	31	cWW
15	HL_5J7L_016	5J7L	0.1014	2	GNRA	AA	SSU rRNA	C	726	G	727	G	730	G	731	cWW
16	HL_4LFB_016	4LFB	0.1084	2	GNRA	A	SSU rRNA	C	726	G	727	G	730	G	731	cWW
17	HL_6CZR_087	6CZR	0.1829	2	GNRA	1a	SSU rRNA	C	710	G	711	G	714	G	715	cWW
18	HL_5J7L_190	5J7L	0.1871	2	GNRA	DA	LSU rRNA	U	2356	G	2357	G	2360	G	2361	cWW
19	HL_4C7O_001	4C7O	0.2084	2	GNRA	E	SRP RNA	C	19	G	20	A	23	G	24	cWW
20	HL_5HR7_005	5HR7	0.1812	5		D	tRNA	C	31	C	32	C	36	G	39	cWW	ntSW
21	HL_5HR6_002	5HR6	0.2101	5		C	tRNA	C	31	C	32	C	36	G	39	cWW	ntSW
22	HL_4WF9_034	4WF9	0.3813	2	GNRA related	X	LSU rRNA	C	1400	G	1401	A	1404	G	1405	cWW
23	HL_5J7L_167	5J7L	0.2645	2	GNRA	DA	LSU rRNA	C	1363	G	1364	A	1367	G	1368	cWW
24	HL_8VTW_034	8VTW	0.2436	2	GNRA (H)	1A	LSU rRNA	C	1363	G	1364	A	1367	G	1368	cWW
25	HL_4V88_222	4V88	0.2932	2	GNRA related	A6	SSU rRNA	G	1778	U	1779	A	1782	C	1783	cWW
26	HL_8C3A_227	8C3A	0.2862	2	GNRA related (H)	CM	SSU rRNA	G	1765	U	1766	A	1769	C	1770	cWW
27	HL_7A0S_034	7A0S	0.3668	2	GNRA variation	X	LSU rRNA	C	1376	G	1377	C	1380	G	1381	cWW
28	HL_3NDB_001	3NDB	0.4720	2		M	SRP RNA	U	162	G	163	G	166	G	167	cWW
29	HL_3KTW_001	3KTW	0.3575	2		C	SRP RNA	U	163	G	164	G	167	G	168	cWW
30	HL_1L9A_001	1L9A	0.2655	2	GNRA related	B	signal recognition particle RNA S domain	G	146	G	147	G	150	C	151	cWW
31	HL_1JID_001	1JID	0.2652	2	GNRA related	B	HELIX 6 OF HUMAN SRP RNA	G	146	G	147	G	150	C	151	cWW
32	HL_1MFQ_001	1MFQ	0.2984	2	GNRA related	A	SRP RNA	G	146	G	147	G	150	C	151	cWW
33	HL_4WF9_031	4WF9	0.2567	2		X	LSU rRNA	C	1260	G	1261	A	1264	G	1265	cWW
34	HL_7A0S_031	7A0S	0.3302	2		X	LSU rRNA	C	1235	G	1236	A	1239	G	1240	cWW
35	HL_5J7L_164	5J7L	0.2443	2	GNRA	DA	LSU rRNA	U	1222	G	1223	A	1226	G	1227	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAG	8
CGAAGG	5
UGAAAA	3
GGGAGC	3
CGGAAG	2
CCUUUCACG	2
GUGAAC	2
GGAAAC	1
CUAACG	1
CGAGAG	1
UGACGG	1
CGACAG	1
CGAACG	1
UGUAGG	1
UGGAGG	1
CGUAAG	1
UGUGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA	12
GAAG	5
GGAG	4
GGAA	2
CUUUCAC	2
UGAA	2
UAAC	1
GAGA	1
GACG	1
GACA	1
GAAC	1
GUAG	1
GUAA	1
GUGA	1

Release history

Release	3.88
Date	2024-09-11
Status	New id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_29031.1 Version HL_29031.1 of this group appears in releases 3.88 to 3.88 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_29031.1 Version HL_29031.1 of this group appears in releases 3.88 to 3.88

Download

Csv

Json