Motif HL_35978.1 Version HL_35978.1 of this group appears in releases 3.2 to 3.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5DDO_004 | 5DDO | 0.6973 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | B | L-glutamine riboswitch (58-MER) | C | 34 | A | 35 | U | 36 | U | 37 | G | 38 | A | 40 | C | 41 | U | 42 | C | 43 | C | 44 | G | 45 | cWW |
| 2 | HL_5DDO_002 | 5DDO | 0.4333 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | A | L-glutamine riboswitch (58-MER) | C | 34 | A | 35 | U | 36 | U | 37 | G | 38 | A | 40 | C | 41 | U | 42 | C | 43 | C | 44 | G | 45 | cWW |
| 3 | HL_1U6B_003 | 1U6B | 0.2547 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | B | 197-MER | C | 1002 | A | 1003 | U | 1004 | U | 1005 | G | 1006 | A | 1008 | C | 1009 | U | 1010 | C | 1011 | C | 1012 | G | 1013 | cWW |
| 4 | HL_1M5K_002 | 1M5K | 0.2395 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | B | RNA HAIRPIN RIBOZYME | C | 35 | A | 36 | U | 37 | U | 38 | G | 39 | A | 41 | C | 42 | U | 43 | C | 44 | C | 45 | G | 46 | cWW |
| 5 | HL_4C4W_002 | 4C4W | 0.0000 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | H | TSKT-23 | C | 11 | A | 12 | U | 13 | U | 14 | G | 15 | A | 17 | C | 18 | U | 19 | C | 20 | C | 21 | G | 22 | cWW |
| 6 | HL_1URN_002 | 1URN | 0.1941 | 1 | Q | RNA (21-mer) | C | 5 | A | 6 | U | 7 | U | 8 | G | 9 | A | 11 | C | 12 | U | 13 | C | 14 | C | 15 | G | 16 | cWW | |
| 7 | HL_3CUL_002 | 3CUL | 0.3228 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | C | RNA (92-MER) | C | 29 | A | 30 | U | 31 | U | 32 | G | 33 | A | 35 | C | 36 | U | 37 | C | 38 | C | 39 | G | 40 | cWW |
| 8 | HL_3HHN_008 | 3HHN | 0.3059 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | E | Class I ligase ribozyme, self-ligation product | C | 1004 | A | 1005 | U | 1006 | U | 1007 | G | 1008 | A | 1010 | C | 1011 | U | 1012 | C | 1013 | C | 1014 | G | 1015 | cWW |
| 9 | HL_5FJ4_002 | 5FJ4 | 0.2092 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | H | HMKT-7 | C | 11 | A | 12 | U | 13 | U | 14 | G | 15 | A | 17 | C | 18 | U | 19 | C | 20 | C | 21 | G | 22 | cWW |
| 10 | HL_3G9C_005 | 3G9C | 0.3459 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | Q | glmS ribozyme | C | 17|||A | A | 17|||B | U | 17|||C | U | 17|||D | G | 17|||E | A | 17|||G | C | 17|||H | U | 17|||I | C | 17|||J | C | 17|||K | G | 17|||L | cWW |
| 11 | HL_5DDP_002 | 5DDP | 0.2940 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | A | glnA | C | 34 | A | 35 | U | 36 | U | 37 | G | 38 | A | 40 | C | 41 | U | 42 | C | 43 | C | 44 | G | 45 | cWW |
| 12 | HL_4PKD_001 | 4PKD | 0.3670 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | V | U1 snRNA stem-loops 1 and 2 (55-MER) | C | 64 | A | 65 | U | 66 | U | 67 | G | 68 | A | 70 | C | 71 | U | 72 | C | 73 | C | 74 | G | 75 | cWW |
| 13 | HL_3P49_001 | 3P49 | 0.6159 | 1 | A | Glycine riboswitch | C | 722 | A | 723 | U | 724 | U | 725 | G | 726 | A | 728 | C | 729 | U | 730 | C | 731 | C | 732 | G | 733 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUGCACUCCG | 13 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGCACUCC | 13 |
- Annotations
-
- U1 small nuclear ribonucleoprotein A binding hairpin (11)
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.19 | Avg 0.44 | Max 0.87
Coloring options: