Motif HL_35978.6 Version HL_35978.6 of this group appears in releases 3.48 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11	1-11
1	HL_6F4G_001	6F4G	0.8171	2		C	U2-SL4	U	8	A	9	U	10	U	11	G	12	A	14	G	15	A	17	C	18	C	19	G	20	cWW
2	HL_5DDO_002	5DDO	0.4333	1	U1 small nuclear ribonucleoprotein A binding hairpin	A	L-glutamine riboswitch (58-MER)	C	34	A	35	U	36	U	37	G	38	A	40	C	41	U	42	C	43	C	44	G	45	cWW
3	HL_4PKD_001	4PKD	0.3670	1	U1 small nuclear ribonucleoprotein A binding hairpin	V	U1 snRNA stem-loops 1 and 2 (55-MER)	C	64	A	65	U	66	U	67	G	68	A	70	C	71	U	72	C	73	C	74	G	75	cWW
4	HL_6F4H_001	6F4H	0.3278	1	U1 small nuclear ribonucleoprotein A binding hairpin	B	U1-SL2	C	6	A	7	U	8	U	9	G	10	A	12	C	13	C	14	U	15	C	16	G	17	cWW
5	HL_5DDP_002	5DDP	0.2940	1	U1 small nuclear ribonucleoprotein A binding hairpin	A	glnA	C	34	A	35	U	36	U	37	G	38	A	40	C	41	U	42	C	43	C	44	G	45	cWW
6	HL_3G9C_005	3G9C	0.3459	1	U1 small nuclear ribonucleoprotein A binding hairpin	Q	glmS ribozyme	C	17\|\|\|A	A	17\|\|\|B	U	17\|\|\|C	U	17\|\|\|D	G	17\|\|\|E	A	17\|\|\|G	C	17\|\|\|H	U	17\|\|\|I	C	17\|\|\|J	C	17\|\|\|K	G	17\|\|\|L	cWW
7	HL_5FJ4_002	5FJ4	0.2092	1	U1 small nuclear ribonucleoprotein A binding hairpin	H	HMKT-7	C	11	A	12	U	13	U	14	G	15	A	17	C	18	U	19	C	20	C	21	G	22	cWW
8	HL_4C4W_002	4C4W	0.0000	1	U1 small nuclear ribonucleoprotein A binding hairpin	H	TSKT-23	C	11	A	12	U	13	U	14	G	15	A	17	C	18	U	19	C	20	C	21	G	22	cWW
9	HL_1U6B_003	1U6B	0.2547	1	U1 small nuclear ribonucleoprotein A binding hairpin	B	197-MER	C	1002	A	1003	U	1004	U	1005	G	1006	A	1008	C	1009	U	1010	C	1011	C	1012	G	1013	cWW
10	HL_3HHN_008	3HHN	0.3059	1	U1 small nuclear ribonucleoprotein A binding hairpin	E	Class I ligase ribozyme, self-ligation product	C	1004	A	1005	U	1006	U	1007	G	1008	A	1010	C	1011	U	1012	C	1013	C	1014	G	1015	cWW
11	HL_3CUL_002	3CUL	0.3228	1	U1 small nuclear ribonucleoprotein A binding hairpin	C	RNA (92-MER)	C	29	A	30	U	31	U	32	G	33	A	35	C	36	U	37	C	38	C	39	G	40	cWW
12	HL_3IWN_002	3IWN	0.9142	1		A	C-di-GMP riboswitch	C	57	A	58	U	59	U	60	G	61	C	62	A	63	U	65	C	66	C	67	G	68	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUUGCACUCCG	10
UAUUGCAGUACCG	1
CAUUGCACCUCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUUGCACUCC	10
AUUGCAGUACC	1
AUUGCACCUC	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: U1 small nuclear ribonucleoprotein A binding hairpin (10)
(2)
Basepair signature: cWW-R-R-R-R-R-R-R-R
Heat map statistics: Min 0.21 | Avg 0.52 | Max 1.11

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Coloring options: Nucleotide numbers

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