Motif HL_61911.1 Version HL_61911.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6CZR_077 | 6CZR | 0.4072 | 1 | GNRA related | 1a | G | 255 | G | 256 | U | 257 | A | 258 | A | 259 | U | 260 | G | 261 | C | 263 | cWW | |
| 2 | HL_4LFB_006 | 4LFB | 0.3616 | 1 | GNRA related | A | G | 259 | G | 260 | U | 261 | A | 262 | A | 263 | U | 264 | G | 265 | C | 267 | cWW | |
| 3 | HL_5J7L_006 | 5J7L | 0.4078 | 1 | GNRA related | AA | G | 259 | G | 260 | U | 261 | A | 262 | A | 263 | C | 264 | G | 265 | C | 267 | cWW | |
| 4 | HL_8C3A_199 | 8C3A | 0.3901 | 1 | GNRA related | CM | G | 328 | A | 329 | U | 330 | A | 331 | G | 332 | U | 333 | G | 334 | C | 336 | cWW | |
| 5 | HL_4V88_193 | 4V88 | 0.3650 | 1 | GNRA related | A6 | G | 330 | A | 331 | U | 332 | A | 333 | G | 334 | U | 335 | G | 336 | C | 338 | cWW | |
| 6 | HL_4R4V_003 | 4R4V | 0.2513 | 1 | T-loop related | A | G | 689 | U | 690 | U | 691 | G | 692 | A | 693 | C | 694 | A | 696 | C | 697 | cWW | |
| 7 | HL_2FMT_005 | 2FMT | 0.1866 | 1 | T-loop related | D | G | 31 | OMC | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 38 | C | 39 | cWW | ncWW |
| 8 | HL_5L4O_002 | 5L4O | 0.0000 | 1 | tRNA anticodon loop | A | G | 31 | OMC | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 38 | C | 39 | cWW | cWW |
| 9 | HL_1U9S_003 | 1U9S | 0.3267 | 1 | A | G | 181 | G | 182 | U | 183 | A | 184 | A | 185 | G | 186 | A | 187 | C | 189 | cWW | ||
| 10 | HL_3CUL_003 | 3CUL | 0.2899 | 1 | T-loop related | C | G | 69 | U | 70 | U | 71 | C | 72 | G | 73 | A | 74 | U | 76 | C | 77 | cWW | cwW |
| 11 | HL_6PRV_001 | 6PRV | 0.3497 | 3 | A | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | ||
| 12 | HL_1MMS_001 | 1MMS | 0.3469 | 3 | C | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | ||
| 13 | HL_5D8H_001 | 5D8H | 0.3236 | 3 | A | C | 1174 | U | 1175 | U | 1176 | A | 1177 | G | 1178 | A | 1179 | A | 1183 | G | 1184 | cWW | ||
| 14 | HL_5J7L_161 | 5J7L | 0.3477 | 3 | DA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | ||
| 15 | HL_8C3A_027 | 8C3A | 0.3094 | 3 | 1 | C | 1235 | A | 1236 | U | 1237 | G | 1238 | G | 1239 | A | 1240 | C | 1244 | G | 1245 | cWW | cWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGAAGCAG | 4 |
| GGUAAUGGC | 2 |
| GAUAGUGGC | 2 |
| GGUAACGGC | 1 |
| GUUGACUAC | 1 |
| GUCAUAAC | 1 |
| G(OMC)UCAUAAC | 1 |
| GGUAAGAGC | 1 |
| GUUCGAAUC | 1 |
| CAUGGAAGUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGAAGCA | 4 |
| GUAAUGG | 2 |
| AUAGUGG | 2 |
| (OMC)UCAUAA | 2 |
| GUAACGG | 1 |
| UUGACUA | 1 |
| GUAAGAG | 1 |
| UUCGAAU | 1 |
| AUGGAAGUC | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- GNRA related (5)
- T-loop related (3)
- tRNA anticodon loop (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.38 | Max 0.70
Coloring options: