Motif HL_70489.1 Version HL_70489.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3O58_050 | 3O58 | 0.0000 | 1 | 1 | 25S ribosomal RNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | ||||
| 2 | HL_1S72_030 | 1S72 | 0.4454 | 3 | 0 | LSU rRNA | C | 1168 | U | 1169 | U | 1170 | A | 1171 | G | 1172 | A | 1173 | A | 1177 | G | 1178 | cWW | ncWW | |||
| 3 | HL_1MMS_001 | 1MMS | 0.8954 | 3 | C | 23S RIBOSOMAL RNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | ||||
| 4 | HL_2QBG_023 | 2QBG | 0.9768 | 0 | B | 23S rRNA | G | 712 | G | 713 | U | 714 | A | 715 | A | 716 | C | 717 | A | 718 | C | 719 | cWW | ||||
| 5 | HL_1E8O_001 | 1E8O | 0.8050 | 0 | GNRA wlth tandem sheared | E | 7SL RNA | G | 110 | G | 111 | U | 112 | G | 113 | G | 114 | C | 115 | G | 116 | C | 117 | cWW | ntSH | ntSHa | |
| 6 | HL_2ZJR_028 | 2ZJR | 0.8533 | 3 | X | LSU rRNA | C | 1075 | U | 1076 | U | 1077 | A | 1078 | G | 1079 | A | 1080 | A | 1084 | G | 1085 | cWW | ntWH | |||
| 7 | HL_3PYO_022 | 3PYO | 0.8020 | 0 | A | 23S ribosomal RNA | G | 712 | G | 713 | U | 714 | G | 715 | A | 716 | G | 717 | A | 718 | C | 719 | cWW | ntSH | |||
| 8 | HL_2ZJR_025 | 2ZJR | 0.7215 | 0 | X | LSU rRNA | G | 888 | C | 889 | U | 890 | A | 891 | A | 911 | A | 912 | A | 913 | C | 914 | cWW | ||||
| 9 | HL_3PYO_057 | 3PYO | 0.8309 | 0 | A | 23S ribosomal RNA | C | 2355 | C | 2356 | U | 2357 | G | 2358 | C | 2359 | A | 2360 | A | 2361 | G | 2362 | cWW | ||||
| 10 | HL_2ZJR_029 | 2ZJR | 0.8309 | 0 | X | LSU rRNA | C | 1103 | G | 1104 | U | 1105 | A | 1106 | A | 1107 | U | 1108 | A | 1109 | G | 1110 | cWW | tSH | |||
| 11 | HL_1MMS_003 | 1MMS | 0.8567 | 3 | D | 23S RIBOSOMAL RNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | ||||
| 12 | HL_1QA6_001 | 1QA6 | 0.8313 | 3 | C | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | C | 114 | U | 115 | U | 116 | A | 117 | G | 118 | A | 119 | A | 123 | G | 124 | cWW | ||||
| 13 | HL_1QA6_003 | 1QA6 | 0.8120 | 3 | D | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | C | 114 | U | 115 | U | 116 | A | 117 | G | 118 | A | 119 | A | 123 | G | 124 | cWW | ||||
| 14 | HL_1NBS_002 | 1NBS | 0.9639 | 0 | A | RNase P class B | C | 118 | U | 119 | U | 120 | U | 121 | A | 122 | G | 123 | A | 124 | G | 125 | cWW | ntSH | |||
| 15 | HL_2QBG_051 | 2QBG | 0.9584 | 1 | B | 23S rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGAAGCAG | 6 |
| UCUAAUUAG | 1 |
| GGUAACAC | 1 |
| GGUGGCGC | 1 |
| GGUGAGAC | 1 |
| GCUAAAAC | 1 |
| CCUGCAAG | 1 |
| CGUAAUAG | 1 |
| CUUUAGAG | 1 |
| GGUAAGUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGAAGCA | 6 |
| CUAAUUA | 1 |
| GUAACA | 1 |
| GUGGCG | 1 |
| GUGAGA | 1 |
| CUAAAA | 1 |
| CUGCAA | 1 |
| GUAAUA | 1 |
| UUUAGA | 1 |
| GUAAGUU | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_70489.1 | Only in the child motif |
|---|---|---|---|
| HL_81943.1 Compare | HL_1QA6_003, HL_1QA6_001, HL_1E8O_001, HL_1NBS_002, HL_2ZJR_029, HL_2ZJR_028, HL_1MMS_003, HL_1MMS_001, HL_3PYO_022 | HL_2QBG_023, HL_1S72_030, HL_3PYO_057, HL_2ZJR_025, HL_3O58_050, HL_2QBG_051 | HL_1QA6_004, HL_1QA6_002, HL_1S72_031, HL_2QBG_031, HL_1MMS_002, HL_1MMS_004 |
| HL_82371.1 Compare | HL_2QBG_051, HL_2QBG_023, HL_3PYO_057, HL_3O58_050 | HL_2ZJR_025, HL_1QA6_003, HL_1QA6_001, HL_1E8O_001, HL_1NBS_002, HL_2ZJR_029, HL_2ZJR_028, HL_1MMS_003, HL_1MMS_001, HL_3PYO_022, HL_1S72_030 | HL_3O58_070 |
| HL_06261.1 Compare | HL_1S72_030 | HL_2QBG_023, HL_1QA6_003, HL_1QA6_001, HL_1E8O_001, HL_1NBS_002, HL_3PYO_057, HL_2ZJR_025, HL_2ZJR_029, HL_2ZJR_028, HL_2QBG_051, HL_1MMS_003, HL_1MMS_001, HL_3O58_050, HL_3PYO_022 | HL_2IL9_006, HL_2QBG_030, HL_2ZJR_055 |
- Annotations
-
- (14)
- GNRA wlth tandem sheared (1)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.52 | Max 0.98
Coloring options: