Motif HL_06261.1 Version HL_06261.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_055 | 2ZJR | 0.2950 | 0 | GNRA with extra cWW (H) | X | LSU rRNA | C | 2334 | U | 2335 | G | 2336 | A | 2337 | C | 2338 | A | 2339 | C | 2340 | G | 2341 | cWW | ntSH | |
| 2 | HL_2QBG_030 | 2QBG | 0.0000 | 3 | B | 23S rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | |||
| 3 | HL_1S72_030 | 1S72 | 0.6104 | 3 | 0 | LSU rRNA | C | 1168 | U | 1169 | U | 1170 | A | 1171 | G | 1172 | A | 1173 | A | 1177 | G | 1178 | cWW | ncWW | ||
| 4 | HL_2IL9_006 | 2IL9 | 0.7370 | 0 | M | Ribosomal Binding Domain of the IRES RNA | G | 6118 | C | 6119 | G | 6119|||A | A | 6119|||B | A | 6119|||C | A | 6119|||D | G | 6119|||E | C | 6124 | cWW | ncWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGAAGCAG | 2 |
| CUGACACG | 1 |
| GCGAAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGAAGCA | 2 |
| UGACAC | 1 |
| CGAAAG | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_06261.1 | Only in the parent motif |
|---|---|---|---|
| HL_70489.1 Compare | HL_1S72_030 | HL_2IL9_006, HL_2QBG_030, HL_2ZJR_055 | HL_2QBG_023, HL_1QA6_003, HL_1QA6_001, HL_1E8O_001, HL_1NBS_002, HL_3PYO_057, HL_2ZJR_025, HL_2ZJR_029, HL_2ZJR_028, HL_2QBG_051, HL_1MMS_003, HL_1MMS_001, HL_3O58_050, HL_3PYO_022 |
| HL_20325.1 Compare | HL_2IL9_006 | HL_1S72_030, HL_2QBG_030, HL_2ZJR_055 | |
| HL_73320.1 Compare | HL_2QBG_030 | HL_1S72_030, HL_2IL9_006, HL_2ZJR_055 | |
| HL_26690.1 Compare | HL_2ZJR_055 | HL_2IL9_006, HL_2QBG_030, HL_1S72_030 |
Children motifs
| Child motif | Common motif instances | Only in HL_06261.1 | Only in the child motif |
|---|---|---|---|
| HL_72543.1 Compare | HL_2QBG_030, HL_1S72_030 | HL_2IL9_006, HL_2ZJR_055 | HL_3U5H_027, HL_1QA6_001, HL_2ZJR_028 |
| HL_18781.1 Compare | HL_2IL9_006, HL_2ZJR_055 | HL_2QBG_030, HL_1S72_030 | HL_2QBG_023, HL_2XZM_008, HL_1U9S_003, HL_1S72_031, HL_2QBG_031, HL_3U5H_028, HL_1E8O_001, HL_1QA6_002, HL_1NBS_002, HL_2ZJR_029, HL_3V2F_055, HL_3U5F_008, HL_1FJG_006, HL_3V2F_022, HL_4A1B_012, HL_3NPB_003, HL_4A1B_032, HL_3Q1Q_005, HL_2AW7_006 |
- Annotations
-
- (3)
- GNRA with extra cWW (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.30 | Avg 0.44 | Max 0.74
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