Motif HL_81943.1 Version HL_81943.1 of this group appears in releases 0.2 to 0.2

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8	1-8	2-6	2-7	3-6
1	HL_1QA6_002	1QA6	0.2936	0		C	LSU rRNA	C	142	G	143	U	144	A	145	A	146	U	147	A	148	G	149	cWW		tSH
2	HL_1QA6_004	1QA6	0.1338	0		D	LSU rRNA	C	142	G	143	U	144	A	145	A	146	U	147	A	148	G	149	cWW		tSH
3	HL_1S72_031	1S72	0.1337	0	GNRA with tandem sheared (H)	0	LSU rRNA	C	1196	G	1197	U	1198	A	1199	A	1200	C	1201	A	1202	G	1203	cWW		tSH	ntSHa
4	HL_1NBS_002	1NBS	0.0470	0		A	RNase P class B	C	118	U	119	U	120	U	121	A	122	G	123	A	124	G	125	cWW		ntSH
5	HL_1MMS_004	1MMS	0.0000	0		D	LSU rRNA	C	1092	G	1093	U	1094	A	1095	A	1096	C	1097	A	1098	G	1099	cWW		tSH	ntSHa
6	HL_2QBG_031	2QBG	0.1285	0		B	LSU rRNA	C	1092	G	1093	U	1094	A	1095	A	1096	U	1097	A	1098	G	1099	cWW		tSH
7	HL_1MMS_002	1MMS	0.1797	0	GNRA with tandem sheared	C	LSU rRNA	C	1092	G	1093	U	1094	A	1095	A	1096	C	1097	A	1098	G	1099	cWW		tSH	ntSHa
8	HL_1MMS_001	1MMS	0.3830	3		C	LSU rRNA	C	1064	U	1065	U	1066	A	1067	G	1068	A	1069	A	1073	G	1074	cWW
9	HL_1MMS_003	1MMS	0.4608	3		D	LSU rRNA	C	1064	U	1065	U	1066	A	1067	G	1068	A	1069	A	1073	G	1074	cWW
10	HL_3PYO_022	3PYO	0.4224	0		A	LSU rRNA	G	712	G	713	U	714	G	715	A	716	G	717	A	718	C	719	cWW		ntSH
11	HL_1E8O_001	1E8O	0.4572	0	GNRA with tandem sheared	E	7SL RNA	G	110	G	111	U	112	G	113	G	114	C	115	G	116	C	117	cWW		ntSH	ntSHa
12	HL_2ZJR_029	2ZJR	0.4572	0		X	LSU rRNA	C	1103	G	1104	U	1105	A	1106	A	1107	U	1108	A	1109	G	1110	cWW		tSH
13	HL_1QA6_003	1QA6	0.4713	3		D	LSU rRNA	C	114	U	115	U	116	A	117	G	118	A	119	A	123	G	124	cWW
14	HL_2ZJR_028	2ZJR	0.4596	3		X	LSU rRNA	C	1075	U	1076	U	1077	A	1078	G	1079	A	1080	A	1084	G	1085	cWW	ntWH
15	HL_1QA6_001	1QA6	0.5195	3		C	LSU rRNA	C	114	U	115	U	116	A	117	G	118	A	119	A	123	G	124	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUAGAAGCAG	5
CGUAAUAG	4
CGUAACAG	3
CUUUAGAG	1
GGUGAGAC	1
GGUGGCGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUAGAAGCA	5
GUAAUA	4
GUAACA	3
UUUAGA	1
GUGAGA	1
GUGGCG	1

Release history

Release	0.2
Date	2011-12-08
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in HL_81943.1	Only in the parent motif
HL_70489.1 Compare	HL_1QA6_003, HL_1QA6_001, HL_1E8O_001, HL_1NBS_002, HL_2ZJR_029, HL_2ZJR_028, HL_1MMS_003, HL_1MMS_001, HL_3PYO_022	HL_1QA6_004, HL_1QA6_002, HL_1S72_031, HL_2QBG_031, HL_1MMS_002, HL_1MMS_004	HL_2QBG_023, HL_1S72_030, HL_3PYO_057, HL_2ZJR_025, HL_3O58_050, HL_2QBG_051
HL_79793.1 Compare	HL_1QA6_004, HL_1QA6_002, HL_1S72_031, HL_2QBG_031, HL_1MMS_002, HL_1MMS_004	HL_1QA6_003, HL_1QA6_001, HL_1E8O_001, HL_1NBS_002, HL_2ZJR_029, HL_2ZJR_028, HL_1MMS_003, HL_1MMS_001, HL_3PYO_022	HL_1OOA_002

Children motifs

Child motif	Common motif instances	Only in HL_81943.1	Only in the child motif
HL_18781.1 Compare	HL_1QA6_002, HL_1S72_031, HL_2QBG_031, HL_1E8O_001, HL_1NBS_002, HL_2ZJR_029	HL_1QA6_004, HL_1QA6_003, HL_1QA6_001, HL_2ZJR_028, HL_1MMS_003, HL_1MMS_002, HL_1MMS_001, HL_3PYO_022, HL_1MMS_004	HL_2QBG_023, HL_1U9S_003, HL_4A1B_032, HL_2ZJR_055, HL_3U5H_028, HL_3NPB_003, HL_2XZM_008, HL_3V2F_055, HL_3U5F_008, HL_1FJG_006, HL_3V2F_022, HL_4A1B_012, HL_2IL9_006, HL_3Q1Q_005, HL_2AW7_006
HL_72543.1 Compare	HL_1QA6_001, HL_2ZJR_028	HL_1QA6_004, HL_1QA6_002, HL_1QA6_003, HL_1S72_031, HL_2QBG_031, HL_1E8O_001, HL_1NBS_002, HL_2ZJR_029, HL_1MMS_003, HL_1MMS_002, HL_1MMS_001, HL_3PYO_022, HL_1MMS_004	HL_1S72_030, HL_2QBG_030, HL_3U5H_027

Annotations: (12)
GNRA with tandem sheared (2)
GNRA with tandem sheared (H) (1)
Basepair signature
Heat map statistics: Min 0.00 | Avg 0.36 | Max 0.56

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Coloring options: Nucleotide numbers

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