Motif HL_73247.1 Version HL_73247.1 of this group appears in releases 3.77 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 10-14 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6D3P_002 | 6D3P | 0.8875 | 0 | Pseudoknot geometry | A | RNA (45-MER) | C | 13 | A | 14 | U | 15 | C | 16 | C | 17 | G | 18 | A | 19 | G | 20 | U | 21 | U | 22 | G | 23 | C | 24 | A | 25 | A | 26 | G | 27 | cWW | tWH |
| 2 | HL_7JJU_002 | 7JJU | 0.0000 | 2 | Pseudoknot geometry | B | PLRV_xrRNA | C | 14 | A | 17 | C | 18 | A | 19 | C | 20 | G | 21 | A | 22 | G | 23 | U | 24 | U | 25 | G | 26 | C | 27 | A | 28 | A | 29 | G | 30 | cWW | tWH |
| 3 | HL_7JJU_001 | 7JJU | 0.0309 | 2 | Pseudoknot geometry | A | PLRV_xrRNA | C | 14 | A | 17 | C | 18 | A | 19 | C | 20 | G | 21 | A | 22 | G | 23 | U | 24 | U | 25 | G | 26 | C | 27 | A | 28 | A | 29 | G | 30 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUACACGAGUUGCAAG | 2 |
| CAUCCGAGUUGCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUACACGAGUUGCAA | 2 |
| AUCCGAGUUGCAA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (3)
- Basepair signature
- cWW-F-tWH-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.03 | Avg 0.40 | Max 0.89
Coloring options: