Motif HL_84085.4 Version HL_84085.4 of this group appears in releases 3.88 to 3.88

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-7	3-6
1	HL_5J7L_012	5J7L	0.4101	1	GNRA related	AA	SSU rRNA	G	462	U	463	U	464	A	465	A	466	A	468	C	469	C	470	cWW
2	HL_4V9F_043	4V9F	0.3959	1	GNRA wlth tandem sheared	0	LSU rRNA	C	1705	G	1706	G	1707	C	1708	G	1709	A	1711	A	1712	G	1713	cWW	tSH	ntSH
3	HL_3HHN_010	3HHN	0.2474	0	GNRA wlth tandem sheared	E	Class I ligase ribozyme, self-ligation product	G	92	U	93	U	94	A	95	A	96	A	97	A	98	C	99	cWW	ntSH
4	HL_8VTW_021	8VTW	0.2701	0	GNRA wlth tandem sheared	1A	LSU rRNA	G	712	G	713	U	714	G	715	A	716	G	717	A	718	C	719	cWW	ntSH
5	HL_4V9F_049	4V9F	0.2308	0	GNRA wlth tandem sheared	0	LSU rRNA	C	1916	G	1917	U	1918	A	1919	C	1920	A	1921	A	1922	G	1923	cWW	ntSH
6	HL_5J7L_154	5J7L	0.0000	0	GNRA wlth tandem sheared	DA	LSU rRNA	G	712	G	713	U	714	A	715	A	716	C	717	A	718	C	719	cWW	tSH
7	HL_1MMS_002	1MMS	0.1661	0	GNRA wlth tandem sheared	C	23S RIBOSOMAL RNA	C	1092	G	1093	U	1094	A	1095	A	1096	C	1097	A	1098	G	1099	cWW	tSH	ntSHa
8	HL_6PRV_002	6PRV	0.1693	0	GNRA wlth tandem sheared	A	LSU rRNA	C	1092	G	1093	U	1094	A	1095	A	1096	U	1097	A	1098	G	1099	cWW	tSH
9	HL_5D8H_002	5D8H	0.1609	0	GNRA wlth tandem sheared	A	LSU rRNA	C	1202	G	1203	U	1204	A	1205	A	1206	C	1207	A	1208	G	1209	cWW	tSH
10	HL_8C3A_028	8C3A	0.1697	0	GNRA wlth tandem sheared	1	LSU rRNA	U	1263	G	1264	U	1265	A	1266	A	1267	C	1268	A	1269	A	1270	cWW	tSH
11	HL_4WF9_004	4WF9	0.2873	0	GNRA wlth tandem sheared	X	LSU rRNA	A	136	G	137	U	138	U	139	A	140	U	141	G	142	U	143	cWW
12	HL_5AOX_001	5AOX	0.2584	0	GNRA wlth tandem sheared	C	ALU JO CONSENSUS RNA	G	11	G	12	U	13	G	14	G	15	C	16	U	17	C	18	cWW	ntSH
13	HL_1E8O_001	1E8O	0.2889	0	GNRA wlth tandem sheared	E	7SL RNA	G	110	G	111	U	112	G	113	G	114	C	115	G	116	C	117	cWW	ntSH	ntSHa
14	HL_4KQY_003	4KQY	0.3723	1	GNRA wlth tandem sheared	A	SAM-I riboswitch	C	94	U	95	C	96	G	97	A	98	A	99	C	100	G	102	cWW
15	HL_2IL9_007	2IL9	0.4466	0	GNRA with near cWW	A	Ribosomal Binding Domain of the IRES RNA	G	6118	C	6119	G	6119\|\|\|A	A	6119\|\|\|B	A	6119\|\|\|C	A	6119\|\|\|D	G	6119\|\|\|E	C	6124	cWW	ncWW	tSH
16	HL_6CZR_215	6CZR	0.5972	0	GNRA with near cWW	1a	SSU rRNA	G	152	G	153	G	154	A	155	A	156	A	157	C	158	U	159	ncWW	ncWW	ntSH
17	HL_4V87_253	4V87	0.5880	0	GNRA with near cWW	BB	TRNA-LEU	C	48	C	49	A	50	A	51	U	52	A	53	G	54	G	55	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGUAACAG	2
GUUAAUACC	1
CGGCGAAAG	1
GUUAAAAC	1
GGUGAGAC	1
CGUACAAG	1
GGUAACAC	1
CGUAAUAG	1
UGUAACAA	1
AGUUAUGU	1
GGUGGCUC	1
GGUGGCGC	1
CUCGAACAG	1
GCGAAAGC	1
GGGAAACU	1
CCAAUAGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAACA	4
UUAAUAC	1
GGCGAAA	1
UUAAAA	1
GUGAGA	1
GUACAA	1
GUAAUA	1
GUUAUG	1
GUGGCU	1
GUGGCG	1
UCGAACA	1
CGAAAG	1
GGAAAC	1
CAAUAG	1

Release history

Release	3.88
Date	2024-09-11
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: GNRA wlth tandem sheared (13)
GNRA with near cWW (3)
GNRA related (1)
Basepair signature: cWW-tSH-F-F-F-F
Heat map statistics: Min 0.08 | Avg 0.40 | Max 0.82

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Coloring options: Nucleotide numbers

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